Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12f01
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0069 + 536787-537068,537193-537493,537528-537581,538848-53...    30   2.0  
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967...    28   6.2  
08_02_0907 - 22485714-22486859,22487836-22487882,22488456-224888...    28   8.1  
03_06_0678 - 35480711-35484658                                         28   8.1  
01_01_1170 - 9318332-9318461,9318551-9318613,9318694-9318744,931...    28   8.1  

>01_01_0069 +
           536787-537068,537193-537493,537528-537581,538848-539241,
           539345-539595,539678-539798,539893-540133,540341-540445,
           540571-540615,540738-540890,541132-541410,541705-541841,
           541975-542017,542228-542329
          Length = 835

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +3

Query: 195 VKFPEKFKGTIIEKWADYWKNLFIDYRQMLQDLR 296
           VKF ++F+G ++ +W    K+ F+DY  + +DL+
Sbjct: 2   VKFSKQFEGQLVPEW----KHAFVDYSLLKKDLK 31


>01_03_0284 -
           14595643-14595663,14595978-14596018,14596379-14596732,
           14597023-14597494,14597524-14600001
          Length = 1121

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 450 LNPKAVEHLRFLDTCYNQEVIHY-RSLGILSVMYTSELS 563
           + PK + HLR+L+  Y+Q ++     + IL  + T +LS
Sbjct: 591 IQPKHLHHLRYLNLTYSQNMVRLPEEISILYNLQTLDLS 629


>08_02_0907 -
           22485714-22486859,22487836-22487882,22488456-22488830,
           22489339-22489500,22490325-22490439
          Length = 614

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 568 PVTYTGPIVPTRNQHISVSPPVS 636
           P +Y GP  P+ + HI++ PP S
Sbjct: 390 PFSYQGPPPPSMHNHINLLPPTS 412


>03_06_0678 - 35480711-35484658
          Length = 1315

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 450 LNPKAVEHLRFLDTCYNQEVIHYRSLGILSVMYTSELSNSCD 575
           L PK + HLR+LD  Y++       + IL  + T  LS  CD
Sbjct: 590 LKPKYLHHLRYLDLSYSKIEALPEDISILYHLQTLNLS-ICD 630


>01_01_1170 -
           9318332-9318461,9318551-9318613,9318694-9318744,
           9318837-9318921,9319005-9319068,9319139-9319340,
           9319808-9320502
          Length = 429

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +3

Query: 417 NNEVGLVSEECLNPKAVEHLRFLDTCYNQEVIHYRSLGIL---SVMYTSELSNSCDLYRA 587
           NN   L+ E   NP A++H    D    +E + ++SL +    S+++  E S    L+RA
Sbjct: 94  NNSSLLLVEPQFNPPALQHAT--DELVFEE-LGFKSLCVADAPSLVHLYEASRQPSLFRA 150

Query: 588 HCTYTKPTYFSF 623
            C+      FSF
Sbjct: 151 QCSLVVDCGFSF 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,905,350
Number of Sequences: 37544
Number of extensions: 367215
Number of successful extensions: 860
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)