Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12e24
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    27   3.2  
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    27   3.2  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    26   5.6  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   9.9  

>SPAC19A8.08 |upf2||nonsense-mediated decay protein
            Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -1

Query: 627  NPATTIPSPCR*PYCMAPYVSHN*NEA--IVHSMLEIVQQLGNLQDSFFV 484
            NP   +P P R     +PYV+ N   A    H M  ++ + GN Q S ++
Sbjct: 966  NPGFDVPLPLRASSLGSPYVTRNEESASESSHVMFTLLTKRGNKQRSQYL 1015


>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 165 PTQTVYLITYTHKKFKQLKLSEKTNTFVRN 76
           P  T  LITYT   FK L +   T T V++
Sbjct: 305 PMFTKSLITYTENLFKNLNIKIMTKTVVKD 334


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 564 DSHMAPYSMATDMARESWSQDYFKLLKKL 650
           DS  +PYS A DMA ES   ++F + +K+
Sbjct: 458 DSFSSPYSPAEDMAEES---EFFGMKEKI 483


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 311 ITDILRSSSNSTNHSIAFSRHSVEINRVYCL 219
           I D +RS S S   +  FSR S E   ++CL
Sbjct: 869 IIDTIRSPSISFPSTFPFSRASHEFKVIHCL 899


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,730
Number of Sequences: 5004
Number of extensions: 54475
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)