Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt12e16
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr... 175 3e-45
SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|... 165 5e-42
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces... 28 0.87
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 1.5
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 3.5
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces... 26 3.5
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 26 4.6
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 25 8.1
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 25 8.1
>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 279
Score = 175 bits (427), Expect = 3e-45
Identities = 82/124 (66%), Positives = 102/124 (82%)
Frame = +1
Query: 208 SVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDL 387
S+F V+GGHRAI ++RIGG++ ++ EG HF IPW + I YD+R++PR ISS TG+KDL
Sbjct: 35 SLFNVDGGHRAIKYSRIGGIKNLIYPEGTHFLIPWIETAIDYDVRAKPRNISSLTGTKDL 94
Query: 388 QMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQ 567
QMVNI+ RVLSRPD + L +YR LG DYDE+VLPSI NEVLKSVVA+FNASQLITQR++
Sbjct: 95 QMVNINCRVLSRPDVHALPKIYRTLGGDYDERVLPSIVNEVLKSVVAQFNASQLITQRER 154
Query: 568 VSLL 579
VS L
Sbjct: 155 VSRL 158
>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 165 bits (400), Expect = 5e-42
Identities = 74/122 (60%), Positives = 99/122 (81%)
Frame = +1
Query: 208 SVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDL 387
S++ V GG RA++F+R+ GVQ+ V EG HF IPW Q I+YD+R+RPR I++ TGSKDL
Sbjct: 25 SIYDVPGGKRAVLFDRLSGVQKQVVQEGTHFLIPWLQKAIVYDVRTRPRNIATTTGSKDL 84
Query: 388 QMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQ 567
QMV+++LRVL RP+ ML +Y+ LG DYDE+VLPSI NE+LKSVVA+F+A++LITQR+
Sbjct: 85 QMVSLTLRVLHRPEVGMLPQIYQNLGLDYDERVLPSIGNEILKSVVAQFDAAELITQREV 144
Query: 568 VS 573
VS
Sbjct: 145 VS 146
>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 378
Score = 28.3 bits (60), Expect = 0.87
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 268 QQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKD 384
Q H F + ++ +PW+ P + R + PTG+ D
Sbjct: 324 QIHYFEDFGYYHLPWYHCPTDVQSHATARCLCDPTGTID 362
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 527 ATTDFRTSLHIDGKTFSS*SVPSCLYIVASILASGRESTRREMFTICKS 381
+++DF +S+ SS S+PS V+SIL+S S +I S
Sbjct: 549 SSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSS 597
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 26.2 bits (55), Expect = 3.5
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 376 SKDLQMVNISLRVLSRPDANML--ATMYRQLGTDYDEKVLPSICNEVLKSVV 525
S DLQM ++ ++ L ++ L T+Y + +DY+ V S+C E+L +
Sbjct: 1252 SNDLQMESVCMKFLREKLSHELKELTVYYMVESDYEPDV--SLCPELLSLAI 1301
>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 446 QCTDNLEQIMMKRFCHLYAMKS*NRLLPNSMP 541
QC LE + RF H Y L+PN+MP
Sbjct: 174 QCKMVLENHITSRFPHFYTKLPDVSLVPNNMP 205
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 218 PWKEVIVPLCSTE*EEYNSTYSLKVCTSVYRGFNTPSF 331
P + PL T E ++S+ SLK + +++ FN +F
Sbjct: 114 PHVHALKPLLDTAWEIFDSSPSLKTLSMLHKSFNLHNF 151
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.0 bits (52), Expect = 8.1
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 488 KTFSS*SVPSCLYIVASILASGRESTRREMFTICKSFEPVGEDIL 354
KTF+S PS I S+ R T+ ++F + +SF+ +G + L
Sbjct: 453 KTFASKIKPSHNIISFSLSLVKRFGTKNDLFFLRRSFKNMGIETL 497
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 200 SPNRCLPWKEVIVPLCSTE*EEYNST 277
SP+ LP+K ++P+ T EE NS+
Sbjct: 259 SPSPSLPFKTPLLPVTKTPLEEANSS 284
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,474,175
Number of Sequences: 5004
Number of extensions: 51582
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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