Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12e16
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702...   164   4e-41
04_04_0143 - 23091613-23092467                                        157   8e-39
02_04_0362 - 22366668-22367516                                        155   2e-38
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925...   134   5e-32
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133...   123   1e-28
03_06_0427 - 33857008-33857137,33857224-33857258,33857966-338580...    94   8e-20
05_02_0099 - 6582498-6582725,6583148-6583235,6583437-6583830,658...    32   0.29 

>03_06_0626 -
           35169352-35169546,35169736-35169948,35170102-35170272,
           35170826-35170942,35171078-35171233
          Length = 283

 Score =  164 bits (399), Expect = 4e-41
 Identities = 74/122 (60%), Positives = 98/122 (80%)
 Frame = +1

Query: 208 SVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDL 387
           S++ VEGGHRAI+FNR+ G++  V+ EG HF IPWF+ PIIYD+R+RP  + S +GS+DL
Sbjct: 30  SLYNVEGGHRAIVFNRLEGIKDKVYPEGTHFMIPWFERPIIYDVRARPNLVESTSGSRDL 89

Query: 388 QMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQ 567
           QMV I LRVL+RP    L T+YR LG +++E+VLPSI +E LK+VVA++NASQLITQR+ 
Sbjct: 90  QMVRIGLRVLTRPLPEKLPTIYRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQREA 149

Query: 568 VS 573
           VS
Sbjct: 150 VS 151


>04_04_0143 - 23091613-23092467
          Length = 284

 Score =  157 bits (380), Expect = 8e-39
 Identities = 72/126 (57%), Positives = 95/126 (75%)
 Frame = +1

Query: 202 SQSVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSK 381
           S S++TV+GG RA++F+R  GV      EG HF +PW Q P ++DIR+RP   SS +G+K
Sbjct: 29  SASLYTVDGGERAVIFDRFRGVLPETVGEGTHFLVPWLQKPFVFDIRTRPHNFSSNSGTK 88

Query: 382 DLQMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQR 561
           DLQMVN++LR+LSRPD   L T++  LG +YD+KVLPSI NEVLK+VVA+FNA QL+T+R
Sbjct: 89  DLQMVNLTLRLLSRPDVVHLPTIFTSLGLEYDDKVLPSIGNEVLKAVVAQFNADQLLTER 148

Query: 562 QQVSLL 579
             VS L
Sbjct: 149 PHVSAL 154


>02_04_0362 - 22366668-22367516
          Length = 282

 Score =  155 bits (376), Expect = 2e-38
 Identities = 71/126 (56%), Positives = 96/126 (76%)
 Frame = +1

Query: 202 SQSVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSK 381
           S +++TV+GG RA++F+R  GV     +EG HF +PW Q P I+DIR+RP   SS +G+K
Sbjct: 30  STALYTVDGGQRAVIFDRFRGVLPETSSEGTHFIVPWLQKPFIFDIRTRPHSFSSTSGTK 89

Query: 382 DLQMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQR 561
           DLQMV+++LRVL+RPD + L  ++  LG +YDEKVLPSI NEVLK+VVA+FNA QL+T+R
Sbjct: 90  DLQMVSLTLRVLARPDIDRLPDIFTSLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTER 149

Query: 562 QQVSLL 579
             VS L
Sbjct: 150 PHVSAL 155


>07_01_1055 -
           9253936-9254130,9254271-9254483,9254588-9254758,
           9255743-9255859,9257021-9257186,9258885-9258934,
           9259095-9259268
          Length = 361

 Score =  134 bits (324), Expect = 5e-32
 Identities = 62/104 (59%), Positives = 80/104 (76%)
 Frame = +1

Query: 262 GVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLSRPDANML 441
           G    V+ EG HF IPWF+ PIIYD+R+RP  + S +GS+DLQMV I LRVL+RP    L
Sbjct: 126 GTIYQVYPEGTHFMIPWFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVLTRPMPEKL 185

Query: 442 ATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVS 573
            T+YR LG +++E+VLPSI +E LK+VVA++NASQLITQR+ VS
Sbjct: 186 PTIYRTLGENFNERVLPSIIHETLKAVVAQYNASQLITQRETVS 229



 Score = 36.3 bits (80), Expect = 0.018
 Identities = 14/21 (66%), Positives = 19/21 (90%)
 Frame = +1

Query: 208 SVFTVEGGHRAIMFNRIGGVQ 270
           S++ VEGGHRAI+FNRI G++
Sbjct: 36  SLYNVEGGHRAIVFNRIQGIK 56


>03_06_0437 -
           33912326-33912520,33912870-33912998,33913147-33913317,
           33913877-33913993,33914150-33914800
          Length = 420

 Score =  123 bits (296), Expect = 1e-28
 Identities = 59/101 (58%), Positives = 77/101 (76%)
 Frame = +1

Query: 271 QHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLSRPDANMLATM 450
           Q V+ EG  F I  F+ PIIYD+R+RP  + S +GS+DLQMV I LRVL+RP    L T+
Sbjct: 216 QEVYPEGTQFMILLFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVLTRPLPEKLPTI 275

Query: 451 YRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVS 573
           YR LG +++E+VLPSI +E LK+VVA++NASQLITQR+ VS
Sbjct: 276 YRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQREAVS 316


>03_06_0427 -
           33857008-33857137,33857224-33857258,33857966-33858046,
           33858213-33858338,33858410-33858568,33858797-33858934,
           33859084-33859155,33859359-33860273
          Length = 551

 Score = 93.9 bits (223), Expect = 8e-20
 Identities = 51/110 (46%), Positives = 70/110 (63%)
 Frame = +1

Query: 235 RAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRV 414
           R I  N+   + Q +  E  HF IPWF+   I+D+  RP  + S +GS+DLQMV   L V
Sbjct: 323 REICNNKAVRLLQLLNPEKSHFSIPWFERLTIFDVCPRPNLVESTSGSRDLQMVRPGLGV 382

Query: 415 LSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQ 564
           L+RP    L T YR LG ++ E+VL S+ +E LK+VVA++NASQLI  R+
Sbjct: 383 LTRP----LPTKYRSLGDNFCERVLTSLMHETLKAVVAQYNASQLIIPRE 428


>05_02_0099 -
           6582498-6582725,6583148-6583235,6583437-6583830,
           6585855-6585990,6586413-6586931
          Length = 454

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +1

Query: 223 EGGHRAIMFNRI--GGVQQHVFTEGMHFRIPWFQYPIIYDIRSRP 351
           EGGHR +++  +  GG+Q+H++  G   +I  F    IY ++ RP
Sbjct: 194 EGGHRLLVYEFMANGGLQEHLYPNGAFEKIETFS---IYLVKQRP 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,870,995
Number of Sequences: 37544
Number of extensions: 330467
Number of successful extensions: 700
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)