Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12e16
         (581 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061508-1|AAL29056.1|  299|Drosophila melanogaster LD46344p pro...   235   3e-62
AE013599-2777|AAM68447.1|  243|Drosophila melanogaster CG15081-P...   235   3e-62
AE013599-2776|AAF57631.2|  243|Drosophila melanogaster CG15081-P...   235   3e-62
AE013599-2775|AAF57632.2|  243|Drosophila melanogaster CG15081-P...   235   3e-62
AY122111-1|AAM52623.1|  276|Drosophila melanogaster GH12454p pro...   155   5e-38
AE014134-3047|AAF53765.1|  276|Drosophila melanogaster CG10691-P...   155   5e-38
AE014134-3046|AAN11026.1|  276|Drosophila melanogaster CG10691-P...   155   5e-38
X04228-3|CAA27810.1|  203|Drosophila melanogaster protein ( Dros...    72   7e-13
X04227-3|CAA27807.1|  203|Drosophila melanogaster URF 3 protein.       72   7e-13
BT010318-1|AAQ23636.1|  342|Drosophila melanogaster AT20211p pro...    31   1.5  
AE014296-2601|AAF49563.2|  342|Drosophila melanogaster CG10516-P...    31   1.5  

>AY061508-1|AAL29056.1|  299|Drosophila melanogaster LD46344p
           protein.
          Length = 299

 Score =  235 bits (575), Expect = 3e-62
 Identities = 112/164 (68%), Positives = 130/164 (79%)
 Frame = +1

Query: 88  MAQSKINDMAGKFAXXXXXXXXXXXXXXXXXXXXXXXXSQSVFTVEGGHRAIMFNRIGGV 267
           MAQSK+ND+AGK                          SQS++TVEGGHRAI+F+R+GG+
Sbjct: 1   MAQSKLNDLAGKLGKGGPPGLGIGLKVLAAVGAAAYGVSQSLYTVEGGHRAIIFSRLGGI 60

Query: 268 QQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLSRPDANMLAT 447
           Q  +++EG+H RIPWFQYPIIYDIRSRPRKISSPTGSKDLQM+NISLRVLSRPD+  L  
Sbjct: 61  QSDIYSEGLHVRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMINISLRVLSRPDSLNLPY 120

Query: 448 MYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLL 579
           +++QLG DYDEKVLPSICNEVLKSV+AKFNASQLITQRQQVSLL
Sbjct: 121 LHKQLGVDYDEKVLPSICNEVLKSVIAKFNASQLITQRQQVSLL 164


>AE013599-2777|AAM68447.1|  243|Drosophila melanogaster CG15081-PC,
           isoform C protein.
          Length = 243

 Score =  235 bits (575), Expect = 3e-62
 Identities = 112/164 (68%), Positives = 130/164 (79%)
 Frame = +1

Query: 88  MAQSKINDMAGKFAXXXXXXXXXXXXXXXXXXXXXXXXSQSVFTVEGGHRAIMFNRIGGV 267
           MAQSK+ND+AGK                          SQS++TVEGGHRAI+F+R+GG+
Sbjct: 1   MAQSKLNDLAGKLGKGGPPGLGIGLKVLAAVGAAAYGVSQSLYTVEGGHRAIIFSRLGGI 60

Query: 268 QQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLSRPDANMLAT 447
           Q  +++EG+H RIPWFQYPIIYDIRSRPRKISSPTGSKDLQM+NISLRVLSRPD+  L  
Sbjct: 61  QSDIYSEGLHVRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMINISLRVLSRPDSLNLPY 120

Query: 448 MYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLL 579
           +++QLG DYDEKVLPSICNEVLKSV+AKFNASQLITQRQQVSLL
Sbjct: 121 LHKQLGVDYDEKVLPSICNEVLKSVIAKFNASQLITQRQQVSLL 164


>AE013599-2776|AAF57631.2|  243|Drosophila melanogaster CG15081-PB,
           isoform B protein.
          Length = 243

 Score =  235 bits (575), Expect = 3e-62
 Identities = 112/164 (68%), Positives = 130/164 (79%)
 Frame = +1

Query: 88  MAQSKINDMAGKFAXXXXXXXXXXXXXXXXXXXXXXXXSQSVFTVEGGHRAIMFNRIGGV 267
           MAQSK+ND+AGK                          SQS++TVEGGHRAI+F+R+GG+
Sbjct: 1   MAQSKLNDLAGKLGKGGPPGLGIGLKVLAAVGAAAYGVSQSLYTVEGGHRAIIFSRLGGI 60

Query: 268 QQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLSRPDANMLAT 447
           Q  +++EG+H RIPWFQYPIIYDIRSRPRKISSPTGSKDLQM+NISLRVLSRPD+  L  
Sbjct: 61  QSDIYSEGLHVRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMINISLRVLSRPDSLNLPY 120

Query: 448 MYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLL 579
           +++QLG DYDEKVLPSICNEVLKSV+AKFNASQLITQRQQVSLL
Sbjct: 121 LHKQLGVDYDEKVLPSICNEVLKSVIAKFNASQLITQRQQVSLL 164


>AE013599-2775|AAF57632.2|  243|Drosophila melanogaster CG15081-PA,
           isoform A protein.
          Length = 243

 Score =  235 bits (575), Expect = 3e-62
 Identities = 112/164 (68%), Positives = 130/164 (79%)
 Frame = +1

Query: 88  MAQSKINDMAGKFAXXXXXXXXXXXXXXXXXXXXXXXXSQSVFTVEGGHRAIMFNRIGGV 267
           MAQSK+ND+AGK                          SQS++TVEGGHRAI+F+R+GG+
Sbjct: 1   MAQSKLNDLAGKLGKGGPPGLGIGLKVLAAVGAAAYGVSQSLYTVEGGHRAIIFSRLGGI 60

Query: 268 QQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLSRPDANMLAT 447
           Q  +++EG+H RIPWFQYPIIYDIRSRPRKISSPTGSKDLQM+NISLRVLSRPD+  L  
Sbjct: 61  QSDIYSEGLHVRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMINISLRVLSRPDSLNLPY 120

Query: 448 MYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLL 579
           +++QLG DYDEKVLPSICNEVLKSV+AKFNASQLITQRQQVSLL
Sbjct: 121 LHKQLGVDYDEKVLPSICNEVLKSVIAKFNASQLITQRQQVSLL 164


>AY122111-1|AAM52623.1|  276|Drosophila melanogaster GH12454p
           protein.
          Length = 276

 Score =  155 bits (375), Expect = 5e-38
 Identities = 72/124 (58%), Positives = 96/124 (77%)
 Frame = +1

Query: 202 SQSVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSK 381
           + +++ VEGGHRA++F+R  G++++V  EG HF IPW Q PII+DIRS+PR +   TGSK
Sbjct: 24  NSALYNVEGGHRAVIFDRFTGIKENVVGEGTHFFIPWVQRPIIFDIRSQPRNVPVITGSK 83

Query: 382 DLQMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQR 561
           DLQ VNI+LR+L RP  + L  +Y  LG DYDE+VLPSI  EVLK+VVA+F+A +LITQR
Sbjct: 84  DLQNVNITLRILYRPIPDQLPKIYTILGQDYDERVLPSIAPEVLKAVVAQFDAGELITQR 143

Query: 562 QQVS 573
           + VS
Sbjct: 144 EMVS 147


>AE014134-3047|AAF53765.1|  276|Drosophila melanogaster CG10691-PB,
           isoform B protein.
          Length = 276

 Score =  155 bits (375), Expect = 5e-38
 Identities = 72/124 (58%), Positives = 96/124 (77%)
 Frame = +1

Query: 202 SQSVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSK 381
           + +++ VEGGHRA++F+R  G++++V  EG HF IPW Q PII+DIRS+PR +   TGSK
Sbjct: 24  NSALYNVEGGHRAVIFDRFTGIKENVVGEGTHFFIPWVQRPIIFDIRSQPRNVPVITGSK 83

Query: 382 DLQMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQR 561
           DLQ VNI+LR+L RP  + L  +Y  LG DYDE+VLPSI  EVLK+VVA+F+A +LITQR
Sbjct: 84  DLQNVNITLRILYRPIPDQLPKIYTILGQDYDERVLPSIAPEVLKAVVAQFDAGELITQR 143

Query: 562 QQVS 573
           + VS
Sbjct: 144 EMVS 147


>AE014134-3046|AAN11026.1|  276|Drosophila melanogaster CG10691-PA,
           isoform A protein.
          Length = 276

 Score =  155 bits (375), Expect = 5e-38
 Identities = 72/124 (58%), Positives = 96/124 (77%)
 Frame = +1

Query: 202 SQSVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSK 381
           + +++ VEGGHRA++F+R  G++++V  EG HF IPW Q PII+DIRS+PR +   TGSK
Sbjct: 24  NSALYNVEGGHRAVIFDRFTGIKENVVGEGTHFFIPWVQRPIIFDIRSQPRNVPVITGSK 83

Query: 382 DLQMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQR 561
           DLQ VNI+LR+L RP  + L  +Y  LG DYDE+VLPSI  EVLK+VVA+F+A +LITQR
Sbjct: 84  DLQNVNITLRILYRPIPDQLPKIYTILGQDYDERVLPSIAPEVLKAVVAQFDAGELITQR 143

Query: 562 QQVS 573
           + VS
Sbjct: 144 EMVS 147


>X04228-3|CAA27810.1|  203|Drosophila melanogaster protein (
           Drosophila mRNA forCc gene from dopa decarboxylase gene
           cluster;  mapping2.0 kb from the 5'end of Ddc gene.  ).
          Length = 203

 Score = 71.7 bits (168), Expect = 7e-13
 Identities = 35/65 (53%), Positives = 46/65 (70%)
 Frame = +1

Query: 337 IRSRPRKISSPTGSKDLQMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLK 516
           IRS+PR +   TGSKDLQ VNI+LR+L RP  + L  +Y  LG DYDE+VLPSI  E++ 
Sbjct: 11  IRSQPRNVPEITGSKDLQNVNITLRILYRPIPDQLPKIYTILGQDYDERVLPSIAPEMVS 70

Query: 517 SVVAK 531
             V++
Sbjct: 71  QRVSQ 75


>X04227-3|CAA27807.1|  203|Drosophila melanogaster URF 3 protein.
          Length = 203

 Score = 71.7 bits (168), Expect = 7e-13
 Identities = 35/65 (53%), Positives = 46/65 (70%)
 Frame = +1

Query: 337 IRSRPRKISSPTGSKDLQMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLK 516
           IRS+PR +   TGSKDLQ VNI+LR+L RP  + L  +Y  LG DYDE+VLPSI  E++ 
Sbjct: 11  IRSQPRNVPEITGSKDLQNVNITLRILYRPIPDQLPKIYTILGQDYDERVLPSIAPEMVS 70

Query: 517 SVVAK 531
             V++
Sbjct: 71  QRVSQ 75


>BT010318-1|AAQ23636.1|  342|Drosophila melanogaster AT20211p
           protein.
          Length = 342

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 439 LATMYRQLGTDYDEKVLPSICNEVLKSVVAKFN-ASQLIT 555
           L   Y  + TD D K+ P +C+   KSV+   N  SQ +T
Sbjct: 184 LGVAYTNVPTDPDVKIYPMVCSTAAKSVIRLINCTSQPVT 223


>AE014296-2601|AAF49563.2|  342|Drosophila melanogaster CG10516-PA
           protein.
          Length = 342

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 439 LATMYRQLGTDYDEKVLPSICNEVLKSVVAKFN-ASQLIT 555
           L   Y  + TD D K+ P +C+   KSV+   N  SQ +T
Sbjct: 184 LGVAYTNVPTDPDVKIYPMVCSTAAKSVIRLINCTSQPVT 223


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,231,168
Number of Sequences: 53049
Number of extensions: 550953
Number of successful extensions: 1224
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2317436688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)