Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12e13
         (341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    25   3.2  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    24   5.6  
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...    23   9.8  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    23   9.8  
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ...    23   9.8  

>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 51  NLPAAKLGSSAAERLVFSSYRP 116
           N+P A+LGSSA+++    ++ P
Sbjct: 351 NMPTAELGSSASQKYDIEAWMP 372


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 153 SYTIRNYPLAPRSVDNC*KPTALLRCYQV*LPEGCNKKHWQPVQCVS 13
           SY   +Y ++P S ++     A    YQ     G +K HW+P   VS
Sbjct: 115 SYQAMSYSVSPTSTNSS---VATSLNYQSSRETGISKDHWKPDSDVS 158


>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 70  LVAAQQSGWFSAVIDRTRSKRIIT 141
           L + Q SGW   ++D+  S RI T
Sbjct: 141 LASIQGSGWAWLIVDKDGSLRITT 164


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 12/55 (21%), Positives = 33/55 (60%)
 Frame = +3

Query: 66  KLGSSAAERLVFSSYRPNEEQEDNYVLYSCLDSFTLLLVAYP*VGTSLCLIIQMT 230
           ++ ++  +R +  + +  + Q+ +Y+L +C++S+ +LL   P +   L +I++ T
Sbjct: 60  QISANHGKRQISKASQEQKLQDISYLLRTCVESY-ILLFREPHILALLDIILRHT 113


>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
           Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 141 VLYSCLDSFTLLLVAY 188
           VLY+CL  F LL + Y
Sbjct: 6   VLYTCLAGFILLFLVY 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,113,871
Number of Sequences: 5004
Number of extensions: 18222
Number of successful extensions: 40
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)