Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12e13
         (341 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0670 + 20562188-20562923,20564288-20564826,20564967-205654...    27   3.9  
07_03_1521 + 27419859-27420106,27422050-27423363,27423885-274243...    26   8.9  
04_04_0775 - 27989704-27990281,27990407-27990653,27990743-279908...    26   8.9  
03_02_0581 - 9617039-9617936,9618057-9618502,9618985-9619071,961...    26   8.9  

>07_03_0670 +
           20562188-20562923,20564288-20564826,20564967-20565458,
           20566803-20567018
          Length = 660

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 60  AAKLGSSAAERLVFSSYRPNEEQEDNY-VLYSC 155
           AA  GS    RL+  +YR +EE+E+   VL SC
Sbjct: 196 AAAAGSLGMVRLLTKTYRNDEEEEEELPVLCSC 228


>07_03_1521 +
           27419859-27420106,27422050-27423363,27423885-27424308,
           27424540-27424968,27425228-27425305,27426581-27426839,
           27428542-27428552
          Length = 920

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -1

Query: 194 LWICNQKQSKRI*TAIQY--VIILLLLVRSITAENQPLC 84
           +W+    Q K +  A+    +IILL L ++I+ E QPLC
Sbjct: 121 VWVLLVLQKKIVMAAVVVYAMIILLALGQNISPEFQPLC 159


>04_04_0775 -
           27989704-27990281,27990407-27990653,27990743-27990837,
           27990918-27992388,27993142-27993194,27993295-27993430
          Length = 859

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 15  IHTEPAANVFYCNLPAAKLGSSAAERLVFSSYRPN-EEQEDNYVLYSCLDSF 167
           +HT    N  + + P+A +G +    L FS    N +++E+     S LDSF
Sbjct: 602 LHTPEKVNEQFNHSPSAVVGLTKPSILTFSCSPENADDKEERLSPQSVLDSF 653


>03_02_0581 -
           9617039-9617936,9618057-9618502,9618985-9619071,
           9619276-9619416,9620220-9620411,9620491-9620652,
           9621116-9621199,9621329-9621706
          Length = 795

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 51  NLPAAKLGSSAAERLVFSSYRPNEEQEDNYVLYS 152
           NLP  ++  SA + L+ S  +  EEQE   VL+S
Sbjct: 296 NLPKLQMFKSAIDVLITSLEKHQEEQEIYSVLFS 329


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,769,528
Number of Sequences: 37544
Number of extensions: 107443
Number of successful extensions: 225
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)