Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12e13
         (341 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81553-10|CAB04501.2|  668|Caenorhabditis elegans Hypothetical p...    29   0.87 
Z81553-9|CAB04500.2|  663|Caenorhabditis elegans Hypothetical pr...    29   0.87 
Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical pr...    28   2.0  
Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical pr...    28   2.0  
AF016665-2|AAC71181.1|  662|Caenorhabditis elegans Hypothetical ...    28   2.0  
Z82055-10|CAB04848.2|  659|Caenorhabditis elegans Hypothetical p...    27   4.7  
AL032639-9|CAA21633.1|  303|Caenorhabditis elegans Hypothetical ...    26   6.1  
Z83238-2|CAB05793.1|  343|Caenorhabditis elegans Hypothetical pr...    26   8.1  

>Z81553-10|CAB04501.2|  668|Caenorhabditis elegans Hypothetical
           protein F56H6.12 protein.
          Length = 668

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 78  SAAERLVFSSYRPNEEQEDNYVLYS-CLDSFT 170
           SA   LVF S RP  EQED + + S  +D FT
Sbjct: 103 SANRALVFMSNRPKTEQEDYFQMLSIAIDIFT 134


>Z81553-9|CAB04500.2|  663|Caenorhabditis elegans Hypothetical
           protein F56H6.11 protein.
          Length = 663

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 78  SAAERLVFSSYRPNEEQEDNYVLYS-CLDSFT 170
           SA   LVF S RP  EQED + + S  +D FT
Sbjct: 103 SANRALVFMSNRPKTEQEDYFQMLSIAIDIFT 134


>Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical
           protein T12A7.5 protein.
          Length = 1076

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = +3

Query: 69  LGSSAAERLVFSS----YRPNEEQEDNYVLYSCLD 161
           +GS+  E++ F S    Y   + +E N VLY CLD
Sbjct: 111 VGSNYVEKIFFRSIYHGYSGEQNEEMNMVLYGCLD 145


>Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical
           protein T12A7.5 protein.
          Length = 1076

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = +3

Query: 69  LGSSAAERLVFSS----YRPNEEQEDNYVLYSCLD 161
           +GS+  E++ F S    Y   + +E N VLY CLD
Sbjct: 111 VGSNYVEKIFFRSIYHGYSGEQNEEMNMVLYGCLD 145


>AF016665-2|AAC71181.1|  662|Caenorhabditis elegans Hypothetical
           protein C49D10.8 protein.
          Length = 662

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 78  SAAERLVFSSYRPNEEQEDNY-VLYSCLDSFT 170
           SA   L+F S RP   QED + +L+S +D FT
Sbjct: 108 SAMGALLFVSNRPKTAQEDYFQMLFSAVDIFT 139


>Z82055-10|CAB04848.2|  659|Caenorhabditis elegans Hypothetical
           protein T26H2.7 protein.
          Length = 659

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 78  SAAERLVFSSYRPNEEQEDNYVLYSC-LDSFT 170
           SA++ L+F S RP   +ED + + S  +D FT
Sbjct: 107 SASQALIFMSNRPKTAEEDYFQMLSIGIDIFT 138


>AL032639-9|CAA21633.1|  303|Caenorhabditis elegans Hypothetical
           protein Y38F1A.8 protein.
          Length = 303

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +1

Query: 37  MFFIATFRQLNLVAAQQSGWFSAV 108
           +FF+  +R+L L++A +S W++ V
Sbjct: 118 LFFLMLYRRLFLISAPKSVWYARV 141


>Z83238-2|CAB05793.1|  343|Caenorhabditis elegans Hypothetical
           protein T08G3.2 protein.
          Length = 343

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 266 QQLYKEIIVFYVCHLNY*A*RSAYLWIC 183
           Q +Y+ I VFY  HL Y       +W+C
Sbjct: 110 QFVYRYIAVFYPIHLKYFDKWYLLIWVC 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,154,818
Number of Sequences: 27780
Number of extensions: 101813
Number of successful extensions: 243
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)