Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt12e11
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 29 0.55
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ... 28 0.96
SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ... 27 1.7
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 27 2.2
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 26 3.9
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 26 3.9
SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 5.1
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ... 26 5.1
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 5.1
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 5.1
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 25 9.0
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 25 9.0
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 25 9.0
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 29.1 bits (62), Expect = 0.55
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = -1
Query: 354 PLDVFTNICTQCPQT-NAMTIVPIMPTAQPELEKASGIASRPEPNEDLIRFANDLISEFG 178
P T P+T + T+VPI+ A SGIA++ +++ A DL+ E
Sbjct: 43 PSHALTKTIVLKPKTAKSQTVVPIILAALETTSTPSGIAAKAVGSKEARMAAADLVEEV- 101
Query: 177 FSILRCSYGLYS 142
F I G++S
Sbjct: 102 FGIPPTDVGIFS 113
>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 454
Score = 28.3 bits (60), Expect = 0.96
Identities = 24/95 (25%), Positives = 42/95 (44%)
Frame = -1
Query: 384 RRGRRTSLQHPLDVFTNICTQCPQTNAMTIVPIMPTAQPELEKASGIASRPEPNEDLIRF 205
++G R +L+ V NI + T + PI P +L + +A + ++
Sbjct: 185 KKGSRETLKKKPFVDENIPAELHTTTGDILKPITPE---QLSQGIALAIAKTSTDIVVEN 241
Query: 204 ANDLISEFGFSILRCSYGLYSSSLTVFPLIFSSLG 100
A L+S+F FS+L L S + PL+ +G
Sbjct: 242 AAQLLSQFVFSVLGGHKRLSSRNHNSQPLVCILVG 276
>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 324
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +3
Query: 375 DLF*ATRRLAKLHSSMDQSRYDLSLLLHNYFP 470
D+F R +HS++ ++R D+ ++HN++P
Sbjct: 149 DVFGINRAGYVIHSAIHRARPDVKSIMHNHYP 180
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 107 LEKMSGKTVKEDEYNPYEHRKIEKPNSDIRSLANLIKSS 223
L++ S +VKE E NP RK +P + + N +++S
Sbjct: 315 LQESSINSVKEGESNPVVKRKRGRPRKNKLEIGNSVQTS 353
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
Frame = +2
Query: 281 GIIGT--IVIAFVCGHCVH 331
GI+GT +++ F CG CVH
Sbjct: 819 GIVGTEGLLVCFKCGTCVH 837
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/56 (25%), Positives = 23/56 (41%)
Frame = -3
Query: 433 RLWSMLECSFASLRVA*KRSSHELATSS*CFHEYMHTVSTNKCNDDCSNNADCPAR 266
+L S++E + SL K S + C + + C +DC NN C +
Sbjct: 289 QLHSLVEKKYVSLSCLSKPSEKSVLRLGTCGNGIVEDGEECDCGEDCENNPCCDGK 344
>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 100
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 160 FIRIVFVFLNSLPTHFF 110
F+ IVF+F N PT FF
Sbjct: 69 FLLIVFLFFNLFPTFFF 85
>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 240
Score = 25.8 bits (54), Expect = 5.1
Identities = 20/88 (22%), Positives = 35/88 (39%)
Frame = +2
Query: 77 VISIEQMYPKLEKMSGKTVKEDEYNPYEHRKIEKPNSDIRSLANLIKSSLGSGLLAMPLA 256
V+S E+M + S + +E+E N Y +++ DI + + + L A A
Sbjct: 116 VLSQEEMRQRRLDFSSEDGEEEEENDYIDEDVDEAGYDIEVVDEAENDDMDNDLEANADA 175
Query: 257 FSNSGWAVGIIGTIVIAFVCGHCVHIFV 340
F S + ++ H H FV
Sbjct: 176 FDESNLEASLSPNAELSPRKSHIDHDFV 203
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 422 GPKSLRPFA---FAAQLFSEFALFFTYIGVCCIFTVL 523
G SL+ F+ FA Q FS + +T+I C+ T+L
Sbjct: 266 GDSSLKSFSLHFFALQFFSTSLIQYTHICRKCVITIL 302
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 243 LCHWLSPIRAGQSALLEQSSLHLFVDTVCIYS-*KHQEDVASS 368
LC LSP + QS+ +L +D + IY K ++D+ S
Sbjct: 937 LCKLLSPSQKAQSSKALNEIKYLIIDEISIYKIAKERQDIQCS 979
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/47 (27%), Positives = 17/47 (36%)
Frame = -1
Query: 333 ICTQCPQTNAMTIVPIMPTAQPELEKASGIASRPEPNEDLIRFANDL 193
+C P T +P + PE +KA PN NDL
Sbjct: 373 LCAVDPNTKLSITIPEAGSTDPETQKARAAFESFPPNLQKALMTNDL 419
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 409 SFASLRVA*KRSSHELATSS*CFH 338
S ASL+VA K SH ++ SS FH
Sbjct: 508 SLASLKVAPKYVSHPVSLSSNSFH 531
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +2
Query: 437 RPFAFAAQLFSEFALFFTYIG----VCCIFTVLIADSLKQLFDEYVTTTV 574
R F F L+ AL ++ +CCI T+ ++ + + +Y+ T+V
Sbjct: 234 RWFFFYTLLYPWIALVSAFVAETMTLCCIVTIFYDKNVNRQWKQYILTSV 283
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,015
Number of Sequences: 5004
Number of extensions: 55375
Number of successful extensions: 173
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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