Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12e11
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.60 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             25   0.60 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   4.3  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   4.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
 Frame = -1

Query: 252 SGIASRPEPNEDLIRFANDLISEFGF-SILRCSYGLYSSSLTVFPLIFSSLGYICSIEI- 79
           +G+ASR  P +D I  AN+     GF +++    GL    L   P I ++LGY+    I 
Sbjct: 144 AGLASRTNPLDDSISQANE-----GFCAVISMHDGLV---LYTTPSICTALGYLKDAWIG 195

Query: 78  -TYIDFV 61
            ++ID+V
Sbjct: 196 RSFIDYV 202


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
 Frame = -1

Query: 252 SGIASRPEPNEDLIRFANDLISEFGF-SILRCSYGLYSSSLTVFPLIFSSLGYICSIEI- 79
           +G+ASR  P +D I  AN+     GF +++    GL    L   P I ++LGY+    I 
Sbjct: 139 AGLASRTNPLDDSISQANE-----GFCAVISMHDGLV---LYTTPSICTALGYLKDAWIG 190

Query: 78  -TYIDFV 61
            ++ID+V
Sbjct: 191 RSFIDYV 197


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/42 (26%), Positives = 17/42 (40%)
 Frame = +2

Query: 386 SYSETCKAAFEHGPKSLRPFAFAAQLFSEFALFFTYIGVCCI 511
           +Y+  C   +  G  +     F  +    + LF TYI  C I
Sbjct: 217 NYTADCTQVYSTGNFTCLEVVFVLKRRLGYYLFHTYIPTCLI 258


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 310 CLWTLCAYIRENIK 351
           C WT+ +Y R N+K
Sbjct: 70  CTWTITSYHRINLK 83


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 429 SRYDLSLLLHNYFPNLPYSSPTSVFAVFLPF 521
           SR +      +YFPN  YS   S   + +P+
Sbjct: 112 SRMEYECSRIDYFPNEEYSPDPSDSTMAIPY 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,797
Number of Sequences: 438
Number of extensions: 3413
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)