Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt12e01
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 84 2e-17
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 29 0.87
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 28 1.5
SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomy... 27 3.5
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa... 27 3.5
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 4.7
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 26 6.1
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 26 6.1
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 25 8.1
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 8.1
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 8.1
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 8.1
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 8.1
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 83.8 bits (198), Expect = 2e-17
Identities = 40/96 (41%), Positives = 56/96 (58%)
Frame = +1
Query: 421 IRWPDLVVQVSLHLVSIYGIFLIVTNEVKLLTTLFALATIYTSGFGITAGVHRLWSHRAY 600
+ W ++ L +++IYG+F T ++ T +FA+ SG GITAG HRLWSHRAY
Sbjct: 62 LNWLHCMLIFGLPMIAIYGVF---TTPLQTKTLIFAIIYYAYSGLGITAGYHRLWSHRAY 118
Query: 601 KARTPLRILLAFLFTITGQRDIYTWALDHRVHHKYS 708
KA+ PL LA + I W+ DHR HH+Y+
Sbjct: 119 KAKKPLEYFLAAGGAAAFEGSIRWWSRDHRAHHRYT 154
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 28.7 bits (61), Expect = 0.87
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +1
Query: 253 PALELRLTSDGCK-DENNVEHSKN--NNTVKQNNILNEKTNNETDFD 384
P +RLTS + +E VE K+ +NTVK+ L+ TN ET FD
Sbjct: 83 PTPRMRLTSIQHQLEEAAVEGYKSGESNTVKEPKELHTATNTETQFD 129
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +1
Query: 199 ITMAPAQQNIEVCTEVMEPALELRLTSDGCKDENNVEHSKN-NNTVKQNNILNEKTNNET 375
I+ P +I E +L + D+NN+ ++ N NNT K+ N L + +
Sbjct: 698 ISAYPIAMSIRQTNVYEERSLGIYAADTENDDDNNINNNNNDNNTPKRKNFLMDHIQRQL 757
Query: 376 DFDI 387
D+
Sbjct: 758 SHDL 761
>SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 136
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +1
Query: 265 LRLTSDGCKDENNVEHSKNNNTVKQNNI--LNEKTNNETD 378
L L G E+ ++ NN +N+ LN KT N+TD
Sbjct: 91 LGLVDSGSDSEDEIKEKAENNASLKNDEDDLNTKTENKTD 130
>SPBC13E7.06 |msd1|mug172|spindle pole body protein
Msd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 331
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 250 EPALELRLTSDGCKDENNVEHSKNNNTVKQNNILNEKTNNETDFDISKYEAME 408
E LE D K+ N E ++NNT+K+ E NE ++K +E
Sbjct: 60 EERLEKESLLDAIKN-NEYEKQRDNNTIKRLKNELELYQNECQLQLNKVRTLE 111
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 4.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 168 DSVRSCIRLNGHFLYEFKC 112
DS + C+ +NGHF+ C
Sbjct: 418 DSAKKCVEMNGHFIAGRPC 436
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 277 SDGCKDENNVEHSKNNNTVKQNNILNEKTNNE-TDFDIS 390
+DGC +EN + + V+ N+ T NE T+ D S
Sbjct: 22 ADGCSEENGYYYCNQASEVEFTNVGYSSTYNEITNMDTS 60
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 398 SYLLMSKSVSLLVFSFNILFCLTVLLFL 315
S LL + + LLV SF LF + LLF+
Sbjct: 439 SKLLRREKIPLLVSSFESLFKMNALLFI 466
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/48 (20%), Positives = 27/48 (56%)
Frame = +1
Query: 241 EVMEPALELRLTSDGCKDENNVEHSKNNNTVKQNNILNEKTNNETDFD 384
++ E L+ L + KDE++ + S+ N ++ + +++ N+T+ +
Sbjct: 50 DLKEEDLQKELQKESIKDESSAKSSETENVLEFATLDSKRNVNDTEVE 97
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -3
Query: 408 LHCFIFAD--VKVCFVIGFLV*YIILFDCVVIFGVLHIIFVFTSIRRE 271
LH F FA +++C I F + LF ++F H I+ T I++E
Sbjct: 30 LHNFPFAARWLRICSYIMFGFALVCLFTNTIVFFFKHTIYRGTLIQKE 77
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -3
Query: 408 LHCFIFAD--VKVCFVIGFLV*YIILFDCVVIFGVLHIIFVFTSIRRE 271
LH F FA +++C I F + LF ++F H I+ T I++E
Sbjct: 30 LHNFPFAARWLRICSYIMFGFALVCLFTNTIVFFFKHTIYRGTLIQKE 77
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -3
Query: 408 LHCFIFAD--VKVCFVIGFLV*YIILFDCVVIFGVLHIIFVFTSIRRE 271
LH F FA +++C I F + LF ++F H I+ T I++E
Sbjct: 30 LHNFPFAARWLRICSYIMFGFALVCLFTNTIVFFFKHTIYRGTLIQKE 77
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -3
Query: 408 LHCFIFAD--VKVCFVIGFLV*YIILFDCVVIFGVLHIIFVFTSIRRE 271
LH F FA +++C I F + LF ++F H I+ T I++E
Sbjct: 30 LHNFPFAARWLRICSYIMFGFALVCLFTNTIVFFFKHTIYRGTLIQKE 77
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,963,454
Number of Sequences: 5004
Number of extensions: 62901
Number of successful extensions: 198
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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