Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt12d19
(415 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc... 71 9e-14
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 26 2.0
SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ... 26 2.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 2.7
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 25 3.5
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 25 6.1
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 6.1
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 24 8.1
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 24 8.1
>SPCC1442.08c |cox12||cytochrome c oxidase subunit
VIb|Schizosaccharomyces pombe|chr 3|||Manual
Length = 83
Score = 70.5 bits (165), Expect = 9e-14
Identities = 27/51 (52%), Positives = 34/51 (66%)
Frame = +2
Query: 158 SYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAGRI 310
SY+D+ RC K +GE + PC F Y+SLCP EWV++WD QR GTF I
Sbjct: 33 SYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTFPAPI 83
Score = 30.7 bits (66), Expect = 0.094
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3
Query: 120 RFPNQNQTRHCYQ 158
RFPN NQT+HC+Q
Sbjct: 20 RFPNTNQTKHCFQ 32
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 26.2 bits (55), Expect = 2.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 134 KSDEALLPSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDK 268
K DE L SY+D + +R ++ Y+F Y C N+ K
Sbjct: 218 KKDEQLFISYIDIRLPKSIRQKQLLKKYFFS-CYCPRCENDHTTK 261
>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 25.8 bits (54), Expect = 2.7
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 157 KLRGLPPLPESSRRKIRTML 216
KLR + P PE+SR+++R M+
Sbjct: 177 KLRDIVPEPENSRKRMRWMI 196
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 2.7
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +3
Query: 168 TSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 305
TST A NT+ + S S P++ ST TS P S V
Sbjct: 2360 TSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV 2405
Score = 25.0 bits (52), Expect = 4.7
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +3
Query: 168 TSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 305
TST A NT+ S S P++ ST TS P S V
Sbjct: 1124 TSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 1169
Score = 25.0 bits (52), Expect = 4.7
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +3
Query: 168 TSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 305
TST A NT+ S S P++ ST TS P S V
Sbjct: 2768 TSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 2813
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 25.4 bits (53), Expect = 3.5
Identities = 22/94 (23%), Positives = 36/94 (38%)
Frame = +3
Query: 21 SIEINPRNG*IIISNMPEMIKSPADLKTAPFDPRFPNQNQTRHCYQVTWTSTVARKFAAK 200
S+ I+P +S+ P + AD+K+ P P N H Y+ T +
Sbjct: 92 SLSISPTKS-AAVSSEPNV---EADVKSLSSTPAAPQLNSPSHSYEPTTFPSTTSITENL 147
Query: 201 NTNHATISRECTGLSAPMSGSTSGTTSAPKAPSP 302
T T S + +S + T+ + PSP
Sbjct: 148 PTIDPTRSTRSSSHIQSLSPESKQTSDGHRPPSP 181
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 24.6 bits (51), Expect = 6.1
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +1
Query: 79 SNRPPTSKQHLSTHGSLTKIRRGTATKLRGLPPLPESS--RRKIRTMLLFQESV 234
S PP ++++ S + + TA K LPE RRK + + F +V
Sbjct: 210 STAPPRTRRNSSVSSTSASVAASTAPKAASPAVLPEGKPRRRKNNSQMRFCSTV 263
>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 72
Score = 24.6 bits (51), Expect = 6.1
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -3
Query: 275 CPTCRPTHWGRETCTL 228
CPT PT W +CT+
Sbjct: 3 CPTHGPTTWNPHSCTV 18
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.2 bits (50), Expect = 8.1
Identities = 12/59 (20%), Positives = 29/59 (49%)
Frame = +3
Query: 123 FPNQNQTRHCYQVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPS 299
F + Q+ + T +++++ + +T+ AT++ +S+ + SAP+A S
Sbjct: 292 FKKKTQSHLPNRTTEVPSISKQLSKSSTSIATVAPSLASVSSVTKSPSPTPQSAPRAQS 350
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 24.2 bits (50), Expect = 8.1
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Frame = +3
Query: 141 TRHCYQVTWTSTVARKFAAKNTNHATISRECTGLSAPMS--GSTSGTTSAPKAPS 299
T HCY + + +A N H + E G +S G +SG T + S
Sbjct: 297 TAHCYAMELETQRVWDYAGDNYVHRLLQSETDGKLVELSTDGKSSGWTGSSATES 351
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,779,470
Number of Sequences: 5004
Number of extensions: 37691
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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