Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt12d17
(667 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 94 1e-20
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 87 3e-18
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 81 1e-16
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 58 2e-09
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 58 2e-09
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 55 8e-09
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 54 2e-08
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 52 7e-08
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 52 1e-07
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 52 1e-07
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 50 4e-07
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 49 7e-07
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 48 9e-07
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 48 2e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 48 2e-06
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 47 2e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 47 2e-06
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 46 6e-06
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 45 9e-06
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 44 1e-05
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 43 3e-05
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 42 8e-05
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 42 1e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 42 1e-04
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 41 2e-04
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 40 2e-04
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 40 3e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 40 4e-04
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 39 6e-04
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 37 0.003
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 37 0.003
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 36 0.004
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 35 0.009
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 35 0.009
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 35 0.009
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 35 0.012
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 34 0.021
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.037
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 31 0.20
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 30 0.34
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 29 0.46
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 29 0.60
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 29 0.80
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 28 1.4
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 27 2.4
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 26 4.2
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 26 5.6
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu... 25 7.4
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 25 9.8
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 25 9.8
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 94.3 bits (224), Expect = 1e-20
Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 6/176 (3%)
Frame = +2
Query: 44 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE--PG-NDPYAFLEFTCHXXXXXXXXX 214
TL++G L+P VTE F+ ++ +G K+IR G N Y F+EF
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSM 153
Query: 215 MNKRVVLDKEM-KVNWATSPGNQPKT-DTSNHHHIFVGDLSPEIETNILREAFAP-FGEI 385
NK + + K+NWA+ G + K+ ++ + IFVGDLSP + + FA +
Sbjct: 154 NNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSC 213
Query: 386 SNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPA 553
+ +I+ DPQT S+GY FV F + D ++A+ M GQ G R IR +T K A
Sbjct: 214 KSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKA 269
Score = 56.0 bits (129), Expect = 5e-09
Identities = 58/199 (29%), Positives = 85/199 (42%), Gaps = 30/199 (15%)
Frame = +2
Query: 44 TLYVGNLDPSVTEVFLCTLFG-QIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXX 211
+++VG+L P+V E + +LF + K KI+ +P + Y F+ FT
Sbjct: 187 SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALA 246
Query: 212 XMNKRVVLDKEMKVNWAT--------SPGN---------------QPK---TDTSNHHHI 313
M ++ D+ ++V AT SP N QP DT+N +
Sbjct: 247 EMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANST-V 305
Query: 314 FVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 493
FVG LS + L+ F FGEI +I KG FV FV + AE AI +
Sbjct: 306 FVGGLSKFVSEEELKYLFQNFGEIVYVKIP------PGKGCGFVQFVNRQSAEIAINQLQ 359
Query: 494 GQWLGSRSIRTNWSTRKPP 550
G LG+ IR +W + P
Sbjct: 360 GYPLGNSRIRLSWGRNQNP 378
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 86.6 bits (205), Expect = 3e-18
Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 3/162 (1%)
Frame = +2
Query: 44 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEFTCHXXXXXXXXX 214
+LYVG LDPSVTE L LF IG V ++ R+ + YA++ F
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 215 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 394
+N ++ + ++ W+ + K T N +F+ +L P I+ L + F+ FG+I +C
Sbjct: 141 LNYTLIKGRPCRIMWSQRDPSLRKMGTGN---VFIKNLDPAIDNKALHDTFSAFGKILSC 197
Query: 395 RIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 520
++ D + +KGY FV F A AAI+ +NG L + +
Sbjct: 198 KVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKV 238
Score = 69.7 bits (163), Expect = 3e-13
Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 15/181 (8%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCHXXXXXXXXXMN 220
+Y+ NLD +TE LFGQ G++ ++++ + P + F+ + H +N
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 221 KRVVLDKEMKVNWATSPG----------NQPKTDTSNHH---HIFVGDLSPEIETNILRE 361
+ K++ V A Q K + N + ++F+ +L E++ L+
Sbjct: 323 DKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKA 382
Query: 362 AFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTR 541
F+ FG I++ +I+ D Q KSKG+ FV + +A A+ MN + L + + + R
Sbjct: 383 EFSAFGTITSAKIMTDEQG-KSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQR 441
Query: 542 K 544
K
Sbjct: 442 K 442
Score = 62.1 bits (144), Expect = 7e-11
Identities = 29/87 (33%), Positives = 46/87 (52%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
++VG+L P + +L E F G +++ R+ RD T +S GYA+V+F D E A+ +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 491 NGQWLGSRSIRTNWSTRKPPAKGVNEG 571
N + R R WS R P + + G
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTG 168
Score = 62.1 bits (144), Expect = 7e-11
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 5/154 (3%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKI-IREPGNDP-YAFLEFTCHXXXXXXXXXMN 220
+++ NLDP++ L F G + CK+ + E GN Y F+ F +N
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
Query: 221 KRVVLDKEMKVNWATSPGN-QPKTDT--SNHHHIFVGDLSPEIETNILREAFAPFGEISN 391
++ DK++ V S Q K + +N ++++ +L EI + F FGEI++
Sbjct: 230 GMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITS 289
Query: 392 CRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 493
+V+D Q K +G+ FV++ A+ A+ +N
Sbjct: 290 LSLVKD-QNDKPRGFGFVNYANHECAQKAVDELN 322
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 81.4 bits (192), Expect = 1e-16
Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 3/185 (1%)
Frame = +2
Query: 26 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEFTCHXXX 196
D + T+Y+GNLD VT+ L L Q G V I R+ ++ + F EF
Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65
Query: 197 XXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPF 376
+N+ + K ++VN A+ +T ++FVG+L P ++ +L + F+
Sbjct: 66 EYACQILNQVKLFGKPIRVNRASQDRG---VNTLIGANLFVGNLDPLVDERVLYDTFSAL 122
Query: 377 GEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAK 556
G++ V + +SKGY FVS+ A+AAI+AMN Q+L ++ I +++ ++ K
Sbjct: 123 GQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKR-EGK 181
Query: 557 GVNEG 571
G G
Sbjct: 182 GERHG 186
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 57.6 bits (133), Expect = 2e-09
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Frame = +2
Query: 266 SPGNQPKTDTSNHHHIFVGDLSPEI--ETNILREAFAPFGEISNCRIVRDPQTLKSKGYA 439
+P + P D N +FV +L I T L E F+ FG I +C + P T SKGY
Sbjct: 409 TPTSTPTIDPCN---LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYG 465
Query: 440 FVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAK 556
FVSF +A AI +NG G + + N++ ++ K
Sbjct: 466 FVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKREDRK 504
Score = 40.7 bits (91), Expect = 2e-04
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIV--RDPQTLKSKG---YAFVSFVKKADAEA 475
I+VG+L +++ L E F PFG S ++ + ++ SK +AF++F K A+
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 476 AIQAMNGQWLGSRSIRTNWS-----TRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSPTN 640
AI ++NG +++ ++ + GV++ S+ + F ++ + T
Sbjct: 82 AIASLNGSSFQGNTLKVEYTHIVERYKNKLENGVDQIHHSNNEKAKIRFSKIEKYTKETR 141
Query: 641 TTV 649
TV
Sbjct: 142 PTV 144
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 57.6 bits (133), Expect = 2e-09
Identities = 30/96 (31%), Positives = 52/96 (54%)
Frame = +2
Query: 299 NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAA 478
NH +FVG+L ++ L +AF+ + + ++VRD + K++G+ FVSF A
Sbjct: 28 NHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREG-KTRGFGFVSFKDSDQFLKA 86
Query: 479 IQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSK 586
+ NG+++GSR ++ + +T VNE SK
Sbjct: 87 WREKNGKYIGSRPVKLSRATSDVKPNEVNEKTIDSK 122
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 55.2 bits (127), Expect = 8e-09
Identities = 26/94 (27%), Positives = 52/94 (55%)
Frame = +2
Query: 269 PGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVS 448
P + P+ + + +FV ++ ++ + L++ F+ FG +++ RI+R+P T S+G+ F+S
Sbjct: 89 PQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLS 148
Query: 449 FVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPP 550
F +A +AI +N Q R + + R P
Sbjct: 149 FSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRP 182
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 53.6 bits (123), Expect = 2e-08
Identities = 27/90 (30%), Positives = 47/90 (52%)
Frame = +2
Query: 278 QPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVK 457
+P D++ +FVG LS ++ L + F +G I R++ D Q+ +SKGY +V F
Sbjct: 254 KPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFET 313
Query: 458 KADAEAAIQAMNGQWLGSRSIRTNWSTRKP 547
A+AA+ A + + R + + S +P
Sbjct: 314 PEAAKAAVAANGTKEIDGRMVNLDLSNPRP 343
Score = 50.0 bits (114), Expect = 3e-07
Identities = 26/76 (34%), Positives = 44/76 (57%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
+FVG+LS + L AF G+I + R+ DPQ+ + KG+ +V+F A+ ++ M
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-M 426
Query: 491 NGQWLGSRSIRTNWST 538
NG ++ R R ++ST
Sbjct: 427 NGHFIAGRPCRLDFST 442
Score = 36.3 bits (80), Expect = 0.004
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +2
Query: 8 R*ANMGDE-SHPK-TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 148
R N GD+ S P T++VGNL + TE L T FG GD++ ++ +P
Sbjct: 353 RAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDP 401
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 52.0 bits (119), Expect = 7e-08
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
+FVG++ ++ + E F G + ++V DP+T KGY F F A++ +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 491 NGQWLGSRSIRTNWSTRKP 547
N LG R IR + + P
Sbjct: 69 NNSELGPRKIRVEFPSNDP 87
Score = 35.5 bits (78), Expect = 0.007
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEFTCHXXXXXXXXXM 217
++VGN+ V+E + +F Q+G VK K++ +P Y F EF +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 218 NKRVVLDKEMKVNWATSPGNQPKTDTS 298
N + ++++V + P N P+ + S
Sbjct: 69 NNSELGPRKIRVEF---PSNDPRRNQS 92
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 51.6 bits (118), Expect = 1e-07
Identities = 41/179 (22%), Positives = 79/179 (44%), Gaps = 13/179 (7%)
Frame = +2
Query: 26 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEFTCHXXX 196
+E +T++V L +T L F Q G V+ +I+R+ + A++EF CH
Sbjct: 235 EERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF-CHEDS 293
Query: 197 XXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSN----------HHHIFVGDLSPEIET 346
++ + +L + V + N+ + + H + V ++ +
Sbjct: 294 VQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTD 353
Query: 347 NILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 523
++ F PFG+I + RD Q +SKG+ ++ + A A++ MNG L R++R
Sbjct: 354 EDVKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQYRNPISARNALEKMNGFDLAGRNMR 411
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 51.6 bits (118), Expect = 1e-07
Identities = 27/73 (36%), Positives = 43/73 (58%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
+ VG+L+P + ++L AF PFGEI + + R + + + YAFV F + DA+ A++ M
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAV-DRSYAFVEFDEPEDAKEAMENM 66
Query: 491 NGQWLGSRSIRTN 529
N L R IR +
Sbjct: 67 NYSILCDRCIRVS 79
Score = 37.5 bits (83), Expect = 0.002
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +2
Query: 29 ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR-EPGND-PYAFLEFTCHXXXXX 202
E T++VGNL PSVTE L F G++ + R E D YAF+EF
Sbjct: 2 ERRKATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKE 61
Query: 203 XXXXMNKRVVLDKEMKVN 256
MN ++ D+ ++V+
Sbjct: 62 AMENMNYSILCDRCIRVS 79
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 49.6 bits (113), Expect = 4e-07
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 9/163 (5%)
Frame = +2
Query: 41 KTLYVGNLDPS--VTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXX 214
KT+YVGNL P+ + E+ C + G ++ I+ E +FL+ H
Sbjct: 115 KTVYVGNLPPNTPIDEILSCV---RTGPIESAWILPEKNCAFISFLD-PSHATAFFQDAA 170
Query: 215 MNKRVVLDKEMKVNWATSPGNQPKT-----DTSNHHHIFVGDLSPEIETNILREAFAPFG 379
+ + + E+KV W + + + ++F+G+L I + +RE PFG
Sbjct: 171 LKRLTIRGTEVKVGWGKNSASNSSVLLAVQQSGACRNVFLGNLPNGITEDEIREDLEPFG 230
Query: 380 EISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ--AMNGQW 502
I +IV + + AFV F+ A A A+Q +N +W
Sbjct: 231 PIDQIKIVTE------RNIAFVHFLNIAAAIKAVQELPLNPKW 267
Score = 33.9 bits (74), Expect = 0.021
Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 5/152 (3%)
Frame = +2
Query: 41 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 220
+T+Y+GN+ T +C + G + + ++E F++ ++
Sbjct: 323 RTVYIGNIHADTTIEEICNAV-RGGLLHNIRYLQEKHICFVTFVD-PVSAFRFFEMSNIH 380
Query: 221 KRVVLDKEMKVNWATSPGNQPKTDT-----SNHHHIFVGDLSPEIETNILREAFAPFGEI 385
V+ ++ +K+ W G P +I++G+ + L+E F FGEI
Sbjct: 381 GLVIRNRRLKIGWGKHSGPLPSNIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEI 440
Query: 386 SNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 481
R+ K AFV+F A A AI
Sbjct: 441 EYVNFFRE------KNCAFVNFTSLASAINAI 466
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 48.8 bits (111), Expect = 7e-07
Identities = 28/86 (32%), Positives = 41/86 (47%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
+FVG L+ + L+ F PFG I N +I KG FV + +K+ AE AI M
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIP------FGKGCGFVQYSEKSAAEKAINTM 352
Query: 491 NGQWLGSRSIRTNWSTRKPPAKGVNE 568
G +G+ IR W P +++
Sbjct: 353 QGALVGTSHIRLAWGHNTLPVSALSQ 378
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 48.4 bits (110), Expect = 9e-07
Identities = 29/107 (27%), Positives = 48/107 (44%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
+FV L+P + L F+ FG+I +C+++RD +T S YAF+ F K E A M
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 491 NGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSS 631
+ I ++S + KR+ + D Y++ S
Sbjct: 306 QNVLIDDSRIHVDFSQSVARYRQYYNSNRDRKRSSSRSDDREYHRRS 352
Score = 32.3 bits (70), Expect = 0.065
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGND-PYAFLEFTCHXXXXXXXXXM 217
L+V L+P + L +F + G + C++IR E G+ YAF+EF M
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 218 NKRVVLDKEMKVNWATSPGNQPKTDTSN 301
++ D + V+++ S + SN
Sbjct: 306 QNVLIDDSRIHVDFSQSVARYRQYYNSN 333
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 47.6 bits (108), Expect = 2e-06
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
I+VG+L L + F G + RI +P T +SKG+ V F + DA ++I+ +
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
Query: 491 NGQWLGSRSIR---TNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSPTNTTVYCGG 661
NG G R ++ +++T P V G PS A P + +SP +
Sbjct: 341 NGYRYGGRPLQLSYAHYATPLPAVPTVLSGLPSV--AYTPPVMHIPTTNSPLTPQSFTNS 398
Query: 662 F 664
F
Sbjct: 399 F 399
Score = 42.7 bits (96), Expect = 5e-05
Identities = 28/104 (26%), Positives = 47/104 (45%)
Frame = +2
Query: 272 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 451
GN K T ++VG+LS ++ L+E G + NC I+ P L SKG A + +
Sbjct: 56 GNGQKY-TQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGL-SKGCAIIEY 113
Query: 452 VKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSS 583
+A AI+ ++ Q R + + G + +PS+
Sbjct: 114 STAEEARTAIKTLSNQKFMGRLVYIREDREQNARFGSSSVSPSA 157
Score = 30.3 bits (65), Expect = 0.26
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 41 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 148
+ +YVGNL V L GQ+G+V C+I+ P
Sbjct: 66 RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLP 101
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 148
+YVGNL + ++ L LF IG V +I EP
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP 315
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 47.6 bits (108), Expect = 2e-06
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +2
Query: 290 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 469
D S+ +I++G+L ++ + + F+ FGE + +VRD +T KSKG+AF+ + +
Sbjct: 26 DYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRST 85
Query: 470 EAAIQAMNGQWLGSRSIRTNW-STRKPPAK 556
A+ M L R +R + ++ K P K
Sbjct: 86 VLAVDNMTNVKLLDRLVRVDHVASYKVPQK 115
Score = 31.1 bits (67), Expect = 0.15
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +2
Query: 26 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGNDP-YAFLEFTCHXXX 196
D S +Y+GNLD + E + +F + G+ ++R E G +AFL++
Sbjct: 26 DYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRST 85
Query: 197 XXXXXXMNKRVVLDKEMKVNWATS 268
M +LD+ ++V+ S
Sbjct: 86 VLAVDNMTNVKLLDRLVRVDHVAS 109
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 47.2 bits (107), Expect = 2e-06
Identities = 31/103 (30%), Positives = 51/103 (49%)
Frame = +2
Query: 215 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 394
+N + +D+ ++V+ + P Q DT +FVG+L+ E E L F G I
Sbjct: 245 LNGTMFMDRHLRVDSVSHPMPQ---DTKRC--VFVGNLAFEAEEEPLWRYFGDCGSIDYV 299
Query: 395 RIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 523
RIVRDP+T KG+A++ F + A+ + R++R
Sbjct: 300 RIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNEKKMPEGRTLR 342
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +2
Query: 41 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEF 178
+ ++VGNL E L FG G + +I+R+P + +A+++F
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQF 318
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 47.2 bits (107), Expect = 2e-06
Identities = 25/70 (35%), Positives = 38/70 (54%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
+F+ LS + + + + F +G I R+VR+ T KS GYAFV F ++ D + A +A
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 491 NGQWLGSRSI 520
G L R I
Sbjct: 162 AGLMLNGRRI 171
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 45.6 bits (103), Expect = 6e-06
Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
+FV +L+ + + + L F+ G I + +V +P+T +++GY FV+F DA+ A + +
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 491 NGQWLGSRSIRTNWST-RKPPAKGVNEGAPSSKRAKQ 598
+ L R +R +++T RK ++ K +Q
Sbjct: 67 KNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQ 103
Score = 42.3 bits (95), Expect = 6e-05
Identities = 45/207 (21%), Positives = 85/207 (41%), Gaps = 17/207 (8%)
Frame = +2
Query: 44 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXXX 214
TL+V NL + L F +G +K ++ P N Y F+ F+
Sbjct: 6 TLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKE 65
Query: 215 MNKRVVLDKEMKVNWATSPGNQPKTDTS------------NHHHIFVGDLSPEIET-NIL 355
+ + + + +++++AT P + + DT N + + +L I+ L
Sbjct: 66 LKNKKLHGRILRLDFAT-PRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHL 124
Query: 356 REAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 535
F+ FG++ +I + G+AFV + AE A+ ++NG + R I +W+
Sbjct: 125 EPHFSKFGKVREIKIPTKGGG-RMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWA 183
Query: 536 TRKPPAKGVN-EGAPSSKRAKQPTFDE 613
K + + A S + K+ DE
Sbjct: 184 VSKDAFEATTLKDASSEEENKEFVSDE 210
Score = 34.7 bits (76), Expect = 0.012
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 484
+FV +L E L F FG ++ ++V+DP T +S G F+ F + D + ++
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLE 336
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 45.2 bits (102), Expect = 9e-06
Identities = 18/47 (38%), Positives = 32/47 (68%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 451
+F+G L+ E + LR+ F FGE+ +C ++RD T +S+G+ F++F
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTF 211
Score = 42.7 bits (96), Expect = 5e-05
Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 1/146 (0%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 226
+++G L+ T+ L F Q G+V C ++R+ F M+K
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKE 224
Query: 227 VVLDKEMKVNWATSPGNQ-PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 403
LD ++ P P+ + +FVG + + R F FG + + ++
Sbjct: 225 HHLDGKI-----IDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLM 279
Query: 404 RDPQTLKSKGYAFVSFVKKADAEAAI 481
D T + +G+ FV++ ++ EA +
Sbjct: 280 MDKDTGRPRGFGFVTYENESAVEATM 305
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 44.4 bits (100), Expect = 1e-05
Identities = 20/76 (26%), Positives = 43/76 (56%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
++VG++ E+ + + F G + + ++V DP++ + KGY F + A A +A++ +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 491 NGQWLGSRSIRTNWST 538
N G+R +R ++ T
Sbjct: 67 NNYDAGTRRLRVDFPT 82
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP-GNDP--YAFLEF 178
+YVGN+ + E + +F Q G VK +++ +P P Y F E+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 43.2 bits (97), Expect = 3e-05
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Frame = +2
Query: 251 VNWATSPGNQPKTDTS--NHHHIFVGDLSPEIET--NILREAFAPFGEISNCRIVRDPQT 418
V+W + + P S + +++V +L + T + L + F+PFG I + + P +
Sbjct: 362 VHWDSLRESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNS 421
Query: 419 LKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 544
SKGY FV+F + A A +NG +G + I ++ RK
Sbjct: 422 GISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFAERK 463
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 29 ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVK 124
E T+YVGN+D +++ + F + G V+
Sbjct: 13 EDESSTIYVGNIDSRLSDEEIIKHFSKYGQVE 44
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 41.9 bits (94), Expect = 8e-05
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +2
Query: 365 FAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWL--GSRSIRTNWST 538
F PFG + C I P+T S+ +AFV + DAE A ++G+ L G +R W+
Sbjct: 27 FEPFGPLIRCDIPI-PRTRTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWAK 85
Query: 539 RKPPA 553
+ PP+
Sbjct: 86 QPPPS 90
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 41.5 bits (93), Expect = 1e-04
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +2
Query: 17 NMGDESHP-KTLYVGNLDPSVTEVFLCTLFG-QIGDVKGCKIIREPGNDPYAFLEF 178
N D++ P T+YVGNL PS +E L LF Q+G + C R GN P F+EF
Sbjct: 417 NPADQNPPCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLC--FRTKGNGPMCFVEF 470
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 41.5 bits (93), Expect = 1e-04
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Frame = +2
Query: 251 VNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI----VRDPQT 418
V+ + N P ++ +FVG LS + + +R F G + I VR
Sbjct: 27 VHASAEQSNTP-AQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTR 85
Query: 419 LKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 520
L G AFV+F + D + AI+ +NG+ L R I
Sbjct: 86 LVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREI 119
Score = 31.5 bits (68), Expect = 0.11
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 422 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 520
+ +G+ FVSF D AI+ MNG+ +G ++
Sbjct: 256 RGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTL 288
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 40.7 bits (91), Expect = 2e-04
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Frame = +2
Query: 302 HHHIFVGDLSP--EIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEA 475
++ ++VG ++P +IE + R FA +G+I R+ L S+G AF++++ +A+A+
Sbjct: 173 NYTLYVGGITPTDDIEEIVSRH-FAEWGDIERIRV------LNSRGIAFITYLNEANAQF 225
Query: 476 AIQAMNGQWLG-SRSIRTNWSTRKP-PAKGVNEGAPSSKRA 592
A +AM Q L + W+T P PA +RA
Sbjct: 226 AKEAMAHQSLDHDECLNVRWATTDPNPASQARNQRRLEERA 266
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 40.3 bits (90), Expect = 2e-04
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 38 PKTLYVGNLDP-SVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 178
P +++VG LDP + T L LF + G V CKII + +AFL F
Sbjct: 364 PYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRF 411
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 39.9 bits (89), Expect = 3e-04
Identities = 17/63 (26%), Positives = 36/63 (57%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
I++ +L + + + E PFG++ + +++++ SKG+ F F +DAE AI +
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGL 371
Query: 491 NGQ 499
+G+
Sbjct: 372 DGK 374
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 39.5 bits (88), Expect = 4e-04
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = +2
Query: 317 VGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNG 496
V +LS + LR+ F FG I + +D +T ++KG+AFVS+ + A A ++G
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDG 265
Query: 497 QWLGSRSIRTNWS 535
+ +R +S
Sbjct: 266 YGWNNLILRCEFS 278
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 39.1 bits (87), Expect = 6e-04
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +2
Query: 428 KGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVN-EGAPSSKRAKQPT 604
+G AF +F +A+ +Q +NG + R +R W + PPA+ E KRA +
Sbjct: 273 RGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQLPPAERERVERGKQEKRAVEER 332
Query: 605 FDEVYNQSSPTN 640
+++ + S N
Sbjct: 333 KNQLKSPFSVAN 344
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 36.7 bits (81), Expect = 0.003
Identities = 28/108 (25%), Positives = 49/108 (45%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
+FVG+L E L+E F G+I R++ T K KG+ FV F D + ++AM
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF---PDIDTCMKAM 286
Query: 491 NGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSP 634
LG S R + + +K + +P ++ + + + + P
Sbjct: 287 E---LGHNSWRLEYGEDR--SKRMRNKSPMARSGRFNDAESLGQEDKP 329
Score = 29.5 bits (63), Expect = 0.46
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII 139
L+VGNLD T+ L FGQ+G ++ +++
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLM 260
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 454
+FVG+L + L+ F G++ + RI D + + KGYAFV F+
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFI 141
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 36.3 bits (80), Expect = 0.004
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAA 478
+FV ++SP + + LR F FGE+ + + +P T S G +SF K++ A
Sbjct: 96 VFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSISVA 151
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 35.1 bits (77), Expect = 0.009
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +2
Query: 296 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEA 475
S +F+ +L+ + L+ F PFG++ + D +T KG+A++ F DA+
Sbjct: 320 SETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDF---HDADD 376
Query: 476 AIQA 487
A++A
Sbjct: 377 AVRA 380
Score = 31.5 bits (68), Expect = 0.11
Identities = 21/59 (35%), Positives = 25/59 (42%)
Frame = +2
Query: 410 PQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSK 586
P S G+ FV F KA A AA+ AMNG L + S + A SSK
Sbjct: 659 PGKYLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSK 717
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/50 (24%), Positives = 29/50 (58%)
Frame = +2
Query: 380 EISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 529
EI++ + + + + S+ +AF+ F + DA+ AI+ +N ++ + I +
Sbjct: 31 EITDVSVAKTKEGV-SRRFAFIGFKNEEDADKAIRYLNKSYVETSRIEVH 79
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 35.1 bits (77), Expect = 0.009
Identities = 19/69 (27%), Positives = 35/69 (50%)
Frame = +2
Query: 287 TDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAD 466
++T+ ++F+G+L + EAF FG+I + +I L K AFV F+ D
Sbjct: 293 SNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKI------LSKKNIAFVHFLNIRD 346
Query: 467 AEAAIQAMN 493
A ++ ++
Sbjct: 347 AIKVVRTLS 355
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 35.1 bits (77), Expect = 0.009
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +2
Query: 293 TSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAE 472
TS ++++ L P L FG++S+ + + D +T KGY F F ++ A
Sbjct: 292 TSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSAL 351
Query: 473 AAIQAM 490
I AM
Sbjct: 352 ICISAM 357
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 34.7 bits (76), Expect = 0.012
Identities = 33/160 (20%), Positives = 73/160 (45%), Gaps = 4/160 (2%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKI--IREPGNDPYAFLEFTCHXXXXXXXXXMN 220
LYV N P+ E+ + LF G+V + +R N + +++ ++
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMR-KPDEAHNALQLH 726
Query: 221 KRVVLDKEMKVNWATSPGNQ-PKTDTSNH-HHIFVGDLSPEIETNILREAFAPFGEISNC 394
K+++ +K + + P + P++ ++V ++ ++ + F +G++ +
Sbjct: 727 KKLLEEKYPIQVFISDPLRRTPRSGAVYEGRELYVTNIDFKVNEKDVETFFRDYGQVESV 786
Query: 395 RIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSR 514
RI + + + KG+ +V DAE A+ A G+ LG+R
Sbjct: 787 RIPK--RFNQHKGFGYVVMTTNQDAENALSAA-GKQLGNR 823
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 33.9 bits (74), Expect = 0.021
Identities = 20/87 (22%), Positives = 43/87 (49%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
++VG++ + L+ FA G ++ I+ D T KG+A++ F + + A+ +
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL-LL 115
Query: 491 NGQWLGSRSIRTNWSTRKPPAKGVNEG 571
NG L R ++ + ++ G++ G
Sbjct: 116 NGSMLHERPLKV--TPKRTNVPGMSRG 140
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +2
Query: 41 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFT 181
+++YVGN+D SVT L + F G V I+ + G+ +A++EF+
Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFS 104
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.1 bits (72), Expect = 0.037
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKS-KGYAFVSF 451
I+VG LS IE++ L F+ FG +SN I+ + + + +A+++F
Sbjct: 7 IYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNF 54
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 30.7 bits (66), Expect = 0.20
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
+F+ +LS +I + + F +G + R +R T++++G AFV + DA A + +
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPV---RQIRLGNTVQTRGTAFVVYENVQDARRACEKL 70
Query: 491 NG 496
+G
Sbjct: 71 SG 72
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 29.9 bits (64), Expect = 0.34
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
+FVG + P+ + + F +G+I +C+++ G+ FV DA +
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVEDARDARDIVNDF 57
Query: 491 NG-QWLGSRSI 520
G +++GSR +
Sbjct: 58 QGKEFMGSRIV 68
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 29.5 bits (63), Expect = 0.46
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +2
Query: 308 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 487
++ + +L+P ++ + FGEI NC+ V D Q K A V F A A+ +Q
Sbjct: 101 NVVIENLAPGTSSDDVAATLLNFGEILNCQ-VNDSQ---GKVRASVRFSTLASAQQVVQK 156
Query: 488 MNG 496
++G
Sbjct: 157 LDG 159
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 29.1 bits (62), Expect = 0.60
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +2
Query: 350 ILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 529
IL F +G++ + V+ +TL+ +G AFV F +A A++ + G L + +
Sbjct: 45 ILEHLFGSYGKVID---VQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQ 101
Query: 530 WSTRK 544
+S K
Sbjct: 102 YSKSK 106
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 0.80
Identities = 17/74 (22%), Positives = 33/74 (44%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
+F+G ++ + +LR F FG + + + + + + F+ ++ AE A AM
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYR------HGFLKMFRRDAAEKAQVAM 461
Query: 491 NGQWLGSRSIRTNW 532
+IRT W
Sbjct: 462 ENVPFADTTIRTKW 475
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
++VG+LS + F+ GEI + D T G+ FV + + DA +++ +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 491 NGQWLGSRSIRTN 529
+ L R IR +
Sbjct: 94 SRTSLDERIIRAD 106
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -3
Query: 593 LLSYYWARL---HSHPSLVVYALTSSYVWILIPATGHSLPGWQL 471
+L YY RL S ++ V+++ ++ +L GHS P WQL
Sbjct: 16 ILDYYGKRLATCSSDQTIKVFSIENNQQTLLETLRGHSGPVWQL 59
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKG 127
L+V NL V L LF ++GDVKG
Sbjct: 197 LFVTNLPRIVPYATLLELFSKLGDVKG 223
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 376 W*D-IELSHSTRSSNAQIQGLCFCIICKES 462
W D + L T +S ++I G FC +C+E+
Sbjct: 483 WKDMLILKDQTDTSESRITGFYFCCLCREN 512
>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 374 FGE--ISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
FGE I RI++D ++ K A ++ +++ D +QAM
Sbjct: 436 FGERAIRLLRIIKDKGKIEEKQLANIALLRQRDLRTVLQAM 476
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 533 STRKPPAKGVNEGAPSSKRAKQPTFDEVYNQSSPTNTT 646
S+R PP V + + KQP F ++ + SSP +++
Sbjct: 472 SSRSPPLPEVESNKENDIKRKQP-FHDLMDSSSPDDSS 508
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 25.0 bits (52), Expect = 9.8
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +2
Query: 236 DKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRD 409
DK M+ + A + QP D HI+ + + N RE F + + R VRD
Sbjct: 878 DKIMEADKARANFTQPGGDHLTLLHIWNEWVDTDFSYNWARENFLQYKSLCRARDVRD 935
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,023,139
Number of Sequences: 5004
Number of extensions: 65323
Number of successful extensions: 249
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -