Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt12d17
(667 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 243 8e-65
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 212 2e-55
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 169 8e-51
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 181 5e-46
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 165 3e-41
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 132 2e-31
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 89 2e-18
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 89 2e-18
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 76 3e-14
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 76 3e-14
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 74 8e-14
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 74 1e-13
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 73 2e-13
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 71 1e-12
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 67 9e-12
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 61 8e-10
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 61 8e-10
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 61 8e-10
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 59 2e-09
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 59 2e-09
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 59 2e-09
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 59 2e-09
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 59 2e-09
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 59 2e-09
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 57 1e-08
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 57 1e-08
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 57 1e-08
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 57 1e-08
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 56 2e-08
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 56 3e-08
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 55 4e-08
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 54 7e-08
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 53 2e-07
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 53 2e-07
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 53 2e-07
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 53 2e-07
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 52 4e-07
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 52 5e-07
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 52 5e-07
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 50 1e-06
U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical pr... 50 2e-06
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 50 2e-06
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 48 6e-06
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 48 6e-06
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 48 8e-06
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 48 8e-06
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 47 1e-05
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 47 1e-05
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 47 1e-05
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 47 1e-05
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 46 2e-05
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 46 2e-05
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 46 2e-05
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 46 2e-05
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 46 2e-05
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 45 4e-05
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 45 4e-05
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 45 4e-05
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 45 6e-05
Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical pr... 44 7e-05
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 44 1e-04
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 44 1e-04
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 43 2e-04
AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical ... 43 2e-04
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 42 4e-04
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 42 4e-04
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 42 5e-04
Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical pr... 41 0.001
U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein. 41 0.001
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 39 0.004
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 39 0.004
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 39 0.004
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 39 0.004
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 39 0.004
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 39 0.004
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 39 0.004
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 38 0.005
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 38 0.005
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 38 0.005
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 38 0.006
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 38 0.008
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 37 0.015
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 36 0.020
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 36 0.026
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 35 0.045
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 35 0.045
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 35 0.045
Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical pr... 35 0.060
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 34 0.10
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 34 0.10
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 34 0.10
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 34 0.10
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 33 0.24
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 32 0.32
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 31 0.56
AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical... 31 0.73
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 30 1.7
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 30 1.7
Z73427-7|CAA97799.1| 371|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 29 2.2
U55370-7|AAA97998.2| 388|Caenorhabditis elegans Hypothetical pr... 29 2.2
AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical ... 29 2.2
Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 28 5.2
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 28 5.2
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 28 5.2
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 28 5.2
AF099919-4|AAC68791.1| 230|Caenorhabditis elegans Hypothetical ... 28 5.2
Z74031-6|CAB54239.1| 227|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z74031-5|CAA98457.1| 225|Caenorhabditis elegans Hypothetical pr... 28 6.8
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 28 6.8
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 27 9.1
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 27 9.1
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 27 9.1
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 243 bits (595), Expect = 8e-65
Identities = 118/215 (54%), Positives = 151/215 (70%), Gaps = 1/215 (0%)
Frame = +2
Query: 17 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXX 196
N DE P+TLYVGNLD +VTE F+ TLF QIG V K+I + NDPYAF+EF+ H
Sbjct: 40 NGSDE--PRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDPYAFVEFSDHGQA 97
Query: 197 XXXXXXMNKRVVLDKEMKVNWATSPGNQP-KTDTSNHHHIFVGDLSPEIETNILREAFAP 373
MNKR++LD+EMKVNWA PG Q K DT+ H H+FVGDLS E++ LREAF P
Sbjct: 98 SQALQTMNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQP 157
Query: 374 FGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPA 553
FG++S+ +++RD T KSKGY FVS+ K+ +AE AI+ MNGQWLG R+IRTNW+TRKP
Sbjct: 158 FGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPG- 216
Query: 554 KGVNEGAPSSKRAKQPTFDEVYNQSSPTNTTVYCG 658
++ PS K ++DE+YNQ+S NT+VY G
Sbjct: 217 ---DQEKPSHYNEK--SYDEIYNQTSGDNTSVYVG 246
Score = 68.1 bits (159), Expect = 5e-12
Identities = 63/209 (30%), Positives = 89/209 (42%), Gaps = 24/209 (11%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXXXM 217
++VG+L V L F GDV K+IR+ Y F+ + M
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 218 NKRVVLDKEMKVNWAT-SPGNQPKTDTSNHHH--------------IFVGDLSPEIETNI 352
N + + + ++ NWAT PG+Q K N ++VG+++ E I
Sbjct: 197 NGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDEI 256
Query: 353 LREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNW 532
R+ FA FG I+ RI K +GYAFV F K A AI MN Q +G + +R +W
Sbjct: 257 -RQGFASFGRITEVRI------FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSW 309
Query: 533 ----STRKPP--AKGVNEGAPSSKRAKQP 601
T K P + G G SS QP
Sbjct: 310 GKTGDTGKTPGGSYGYGYGNSSSGGNSQP 338
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 212 bits (518), Expect = 2e-55
Identities = 108/223 (48%), Positives = 138/223 (61%), Gaps = 16/223 (7%)
Frame = +2
Query: 38 PKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXM 217
P+TL+V NLDP++T+ FL TLF QIG V KII E NDPYAF+EF+ H
Sbjct: 39 PRTLFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDPYAFVEFSDHNQATLALQSH 98
Query: 218 NKRVVLDKEMKVNWATSPG----NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 385
N R +L+KEM V WA P N+ K +TS H H+FVGDL EI++ LREAF FGE+
Sbjct: 99 NGRELLEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEV 158
Query: 386 SNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVN 565
S +I+RD T K KGY FVS+ ++ DAE AI MNG WLG R+IRTNW+TRKP G
Sbjct: 159 SEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATRKPDEDGER 218
Query: 566 EGAPSSKRA------------KQPTFDEVYNQSSPTNTTVYCG 658
G +R + T+DE++NQ++ NT+VY G
Sbjct: 219 GGDRGDRRGGGGGGRDRYHNQSEKTYDEIFNQAAADNTSVYVG 261
Score = 46.8 bits (106), Expect = 1e-05
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Frame = +2
Query: 275 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 454
NQ D ++ ++VG+++ E I R AF FG I+ R T K +GYAFV F
Sbjct: 249 NQAAADNTS---VYVGNIANLGEDEI-RRAFDRFGPINEVR------TFKIQGYAFVKFE 298
Query: 455 KKADAEAAIQAMNGQWLGSRSIRTNW----STRKPPAKGVNEGAPS 580
K A AI MN +G + +R +W + KP +G G S
Sbjct: 299 TKESAARAIVQMNNADIGGQIVRCSWGKSGDSGKPSERGSGGGGGS 344
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 169 bits (410), Expect(2) = 8e-51
Identities = 80/149 (53%), Positives = 105/149 (70%), Gaps = 1/149 (0%)
Frame = +2
Query: 215 MNKRVVLDKEMKVNWATSPGNQP-KTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 391
+ K V+ EMKVNWA PG Q K DT+ H H+FVGDLS E++ LREAF PFG++S+
Sbjct: 72 VTKTKVIFDEMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSD 131
Query: 392 CRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 571
+++RD T KSKGY FVS+ K+ +AE AI+ MNGQWLG R+IRTNW+TRKP ++
Sbjct: 132 AKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPG----DQE 187
Query: 572 APSSKRAKQPTFDEVYNQSSPTNTTVYCG 658
PS K ++DE+YNQ+S NT+VY G
Sbjct: 188 KPSHYNEK--SYDEIYNQTSGDNTSVYVG 214
Score = 68.1 bits (159), Expect = 5e-12
Identities = 63/209 (30%), Positives = 89/209 (42%), Gaps = 24/209 (11%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXXXM 217
++VG+L V L F GDV K+IR+ Y F+ + M
Sbjct: 105 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 164
Query: 218 NKRVVLDKEMKVNWAT-SPGNQPKTDTSNHHH--------------IFVGDLSPEIETNI 352
N + + + ++ NWAT PG+Q K N ++VG+++ E I
Sbjct: 165 NGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDEI 224
Query: 353 LREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNW 532
R+ FA FG I+ RI K +GYAFV F K A AI MN Q +G + +R +W
Sbjct: 225 -RQGFASFGRITEVRI------FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSW 277
Query: 533 ----STRKPP--AKGVNEGAPSSKRAKQP 601
T K P + G G SS QP
Sbjct: 278 GKTGDTGKTPGGSYGYGYGNSSSGGNSQP 306
Score = 49.6 bits (113), Expect(2) = 8e-51
Identities = 25/41 (60%), Positives = 29/41 (70%)
Frame = +2
Query: 17 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII 139
N DE P+TLYVGNLD +VTE F+ TLF QIG V K+I
Sbjct: 40 NGSDE--PRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI 78
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 181 bits (440), Expect = 5e-46
Identities = 84/149 (56%), Positives = 110/149 (73%), Gaps = 1/149 (0%)
Frame = +2
Query: 215 MNKRVVLDKEMKVNWATSPGNQP-KTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 391
MNKR++LD+EMKVNWA PG Q K DT+ H H+FVGDLS E++ LREAF PFG++S+
Sbjct: 1 MNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSD 60
Query: 392 CRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 571
+++RD T KSKGY FVS+ K+ +AE AI+ MNGQWLG R+IRTNW+TRKP ++
Sbjct: 61 AKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPG----DQE 116
Query: 572 APSSKRAKQPTFDEVYNQSSPTNTTVYCG 658
PS K ++DE+YNQ+S NT+VY G
Sbjct: 117 KPSHYNEK--SYDEIYNQTSGDNTSVYVG 143
Score = 68.1 bits (159), Expect = 5e-12
Identities = 63/209 (30%), Positives = 89/209 (42%), Gaps = 24/209 (11%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXXXM 217
++VG+L V L F GDV K+IR+ Y F+ + M
Sbjct: 34 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 93
Query: 218 NKRVVLDKEMKVNWAT-SPGNQPKTDTSNHHH--------------IFVGDLSPEIETNI 352
N + + + ++ NWAT PG+Q K N ++VG+++ E I
Sbjct: 94 NGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDEI 153
Query: 353 LREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNW 532
R+ FA FG I+ RI K +GYAFV F K A AI MN Q +G + +R +W
Sbjct: 154 -RQGFASFGRITEVRI------FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSW 206
Query: 533 ----STRKPP--AKGVNEGAPSSKRAKQP 601
T K P + G G SS QP
Sbjct: 207 GKTGDTGKTPGGSYGYGYGNSSSGGNSQP 235
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 165 bits (400), Expect = 3e-41
Identities = 77/139 (55%), Positives = 100/139 (71%), Gaps = 1/139 (0%)
Frame = +2
Query: 245 MKVNWATSPGNQP-KTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTL 421
MKVNWA PG Q K DT+ H H+FVGDLS E++ LREAF PFG++S+ +++RD T
Sbjct: 1 MKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTT 60
Query: 422 KSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQP 601
KSKGY FVS+ K+ +AE AI+ MNGQWLG R+IRTNW+TRKP ++ PS K
Sbjct: 61 KSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPG----DQEKPSHYNEK-- 114
Query: 602 TFDEVYNQSSPTNTTVYCG 658
++DE+YNQ+S NT+VY G
Sbjct: 115 SYDEIYNQTSGDNTSVYVG 133
Score = 68.1 bits (159), Expect = 5e-12
Identities = 63/209 (30%), Positives = 89/209 (42%), Gaps = 24/209 (11%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXXXM 217
++VG+L V L F GDV K+IR+ Y F+ + M
Sbjct: 24 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 83
Query: 218 NKRVVLDKEMKVNWAT-SPGNQPKTDTSNHHH--------------IFVGDLSPEIETNI 352
N + + + ++ NWAT PG+Q K N ++VG+++ E I
Sbjct: 84 NGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDEI 143
Query: 353 LREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNW 532
R+ FA FG I+ RI K +GYAFV F K A AI MN Q +G + +R +W
Sbjct: 144 -RQGFASFGRITEVRI------FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSW 196
Query: 533 ----STRKPP--AKGVNEGAPSSKRAKQP 601
T K P + G G SS QP
Sbjct: 197 GKTGDTGKTPGGSYGYGYGNSSSGGNSQP 225
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 132 bits (320), Expect = 2e-31
Identities = 61/147 (41%), Positives = 91/147 (61%)
Frame = +2
Query: 227 VVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 406
+VL + ++ A+ P + + DTS H H+FVGDLS ++ +L+ F FGE+S +++R
Sbjct: 109 IVLQESAVLHSASEPPMEMRIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIR 168
Query: 407 DPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSK 586
D QT KSKGY FVSF K +AE AI MNG+W+G R++RTNW+ RK S +
Sbjct: 169 DVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWAARK----------NSEE 218
Query: 587 RAKQPTFDEVYNQSSPTNTTVYCGGFT 667
+ TF++V+N + NT+VY G +
Sbjct: 219 NRDKLTFEQVFNSTKADNTSVYVGNIS 245
Score = 70.1 bits (164), Expect = 1e-12
Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 15/195 (7%)
Frame = +2
Query: 26 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXX 196
D S ++VG+L V+ L + F + G+V K+IR+ Y F+ F
Sbjct: 130 DTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNA 189
Query: 197 XXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIF-----------VGDLSPEIE 343
MN + + + ++ NWA ++ D +F VG++S +
Sbjct: 190 ENAIAGMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTT 249
Query: 344 TNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIR 523
LR+ F+ +G+I+ RI K++ YAFV + KK A AI MNG+ + +R
Sbjct: 250 DADLRDLFSTYGDIAEVRI------FKTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVR 303
Query: 524 TNWS-TRKPPAKGVN 565
+W T+ P + +N
Sbjct: 304 CSWGRTQAVPNQALN 318
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 89.4 bits (212), Expect = 2e-18
Identities = 59/200 (29%), Positives = 105/200 (52%), Gaps = 6/200 (3%)
Frame = +2
Query: 26 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE---PGNDPYAFLEFTCHXXX 196
+ + T+YVG LD V+E L L Q G V + ++ + + F+EF
Sbjct: 8 ERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDA 67
Query: 197 XXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPF 376
+N + K +KVN A++ ++ D + IFVG+L PE++ +L + F+ F
Sbjct: 68 DYAIKILNMIKLYGKPIKVNKASA--HEKNMDVGAN--IFVGNLDPEVDEKLLYDTFSAF 123
Query: 377 GEISNC-RIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPA 553
G I +I+RD + SKG+AF++F ++ A++AMNGQ+L +R+I +++ ++ +
Sbjct: 124 GVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKR-DS 182
Query: 554 KGVNEGAPSSK--RAKQPTF 607
KG G + + A+ P F
Sbjct: 183 KGERHGTAAERMLAAQNPLF 202
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 89.4 bits (212), Expect = 2e-18
Identities = 59/200 (29%), Positives = 105/200 (52%), Gaps = 6/200 (3%)
Frame = +2
Query: 26 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE---PGNDPYAFLEFTCHXXX 196
+ + T+YVG LD V+E L L Q G V + ++ + + F+EF
Sbjct: 18 ERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDA 77
Query: 197 XXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPF 376
+N + K +KVN A++ ++ D + IFVG+L PE++ +L + F+ F
Sbjct: 78 DYAIKILNMIKLYGKPIKVNKASA--HEKNMDVGAN--IFVGNLDPEVDEKLLYDTFSAF 133
Query: 377 GEISNC-RIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPA 553
G I +I+RD + SKG+AF++F ++ A++AMNGQ+L +R+I +++ ++ +
Sbjct: 134 GVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKR-DS 192
Query: 554 KGVNEGAPSSK--RAKQPTF 607
KG G + + A+ P F
Sbjct: 193 KGERHGTAAERMLAAQNPLF 212
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 75.8 bits (178), Expect = 3e-14
Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 3/162 (1%)
Frame = +2
Query: 44 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCHXXXXXXXXX 214
+LY+G+L P V+E L F G V ++ R+ + YA++ F
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 117
Query: 215 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 394
MN V+ + M++ W+ P + + +IF+ +L I+ + + F+ FG I +C
Sbjct: 118 MNFEVIHGRPMRIMWSQ---RDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSC 174
Query: 395 RIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 520
++ D + SKGY FV F + A+ AI+ +NG L + +
Sbjct: 175 KVATDDEG-NSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKV 215
Score = 70.5 bits (165), Expect = 1e-12
Identities = 34/97 (35%), Positives = 54/97 (55%)
Frame = +2
Query: 281 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 460
P T + +++GDL P++ +L E F+ G + + R+ RD + S GYA+V+F +
Sbjct: 49 PPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQP 108
Query: 461 ADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 571
ADAE A+ MN + + R +R WS R P A+ G
Sbjct: 109 ADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNG 145
Score = 52.4 bits (120), Expect = 3e-07
Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 5/154 (3%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP-GNDP-YAFLEFTCHXXXXXXXXXMN 220
+++ NLD + + F G++ CK+ + GN Y F+ F +N
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVN 206
Query: 221 KRVVLDKEMKVNWATSPGNQPKT---DTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 391
++ DK++ V + K + ++FV + ++ L F+ FGEI++
Sbjct: 207 GMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITS 266
Query: 392 CRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 493
++ D Q K KG+ FV+F + A A++ +N
Sbjct: 267 AVVMTDAQG-KPKGFGFVAFADQDAAGQAVEKLN 299
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 75.8 bits (178), Expect = 3e-14
Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 3/162 (1%)
Frame = +2
Query: 44 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCHXXXXXXXXX 214
+LY+G+L P V+E L F G V ++ R+ + YA++ F
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 117
Query: 215 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 394
MN V+ + M++ W+ P + + +IF+ +L I+ + + F+ FG I +C
Sbjct: 118 MNFEVIHGRPMRIMWSQ---RDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSC 174
Query: 395 RIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 520
++ D + SKGY FV F + A+ AI+ +NG L + +
Sbjct: 175 KVATDDEG-NSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKV 215
Score = 70.5 bits (165), Expect = 1e-12
Identities = 34/97 (35%), Positives = 54/97 (55%)
Frame = +2
Query: 281 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 460
P T + +++GDL P++ +L E F+ G + + R+ RD + S GYA+V+F +
Sbjct: 49 PPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQP 108
Query: 461 ADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 571
ADAE A+ MN + + R +R WS R P A+ G
Sbjct: 109 ADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNG 145
Score = 52.4 bits (120), Expect = 3e-07
Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 5/154 (3%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP-GNDP-YAFLEFTCHXXXXXXXXXMN 220
+++ NLD + + F G++ CK+ + GN Y F+ F +N
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVN 206
Query: 221 KRVVLDKEMKVNWATSPGNQPKT---DTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 391
++ DK++ V + K + ++FV + ++ L F+ FGEI++
Sbjct: 207 GMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITS 266
Query: 392 CRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 493
++ D Q K KG+ FV+F + A A++ +N
Sbjct: 267 AVVMTDAQG-KPKGFGFVAFADQDAAGQAVEKLN 299
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 74.1 bits (174), Expect = 8e-14
Identities = 55/212 (25%), Positives = 87/212 (41%), Gaps = 4/212 (1%)
Frame = +2
Query: 44 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCHXXXXXXXXX 214
+LYVG+L P V E L F G V ++ R+ YA++ F
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 215 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 394
MN + K M++ W+ P S +IF+ +L I+ + + F+ FG I +C
Sbjct: 93 MNFEALHGKPMRIMWSQ---RDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSC 149
Query: 395 RIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRT-NWSTRKPPAKGVNEG 571
++ D SKGY FV F + A+ AIQ +NG L + + + R + + E
Sbjct: 150 KVAIDEDGF-SKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGET 208
Query: 572 APSSKRAKQPTFDEVYNQSSPTNTTVYCGGFT 667
A F + YN+ + G T
Sbjct: 209 AKQFTNVYVKNFGDHYNKETLEKVFAKFGNIT 240
Score = 72.5 bits (170), Expect = 2e-13
Identities = 37/104 (35%), Positives = 55/104 (52%)
Frame = +2
Query: 260 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYA 439
A PG + ++VGDL P++ +IL E F+ G + + R+ RD T S GYA
Sbjct: 17 APQPGQNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYA 76
Query: 440 FVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 571
+V+F + ADAE A+ MN + L + +R WS R P + G
Sbjct: 77 YVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAG 120
Score = 56.8 bits (131), Expect = 1e-08
Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 5/154 (3%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKI-IREPG-NDPYAFLEFTCHXXXXXXXXXMN 220
+++ NLD + + F G++ CK+ I E G + Y F+ F +N
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 221 KRVVLDKEMKVN--WATSPGNQPKTDTSNHH-HIFVGDLSPEIETNILREAFAPFGEISN 391
++ K++ V + N+ +T+ +++V + L + FA FG I++
Sbjct: 182 GMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKVFAKFGNITS 241
Query: 392 CRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 493
C ++ KSKG+ FV+F +AE A+QA++
Sbjct: 242 CEVMTVEG--KSKGFGFVAFANPEEAETAVQALH 273
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 73.7 bits (173), Expect = 1e-13
Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 4/200 (2%)
Frame = +2
Query: 44 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCHXXXXXXXXX 214
+LYVG+L P V E L F G V ++ R+ YA++ F
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 215 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 394
MN + K M++ W+ P S +IF+ +L I+ + + F+ FG I +C
Sbjct: 93 MNFEALHGKPMRIMWSQ---RDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSC 149
Query: 395 RIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRT-NWSTRKPPAKGVNEG 571
++ D SKGY FV F + A+ AIQ +NG L + + + R + + E
Sbjct: 150 KVAIDEDGF-SKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGET 208
Query: 572 APSSKRAKQPTFDEVYNQSS 631
A F + YN+ +
Sbjct: 209 AKQFTNVYVKNFGDHYNKET 228
Score = 72.5 bits (170), Expect = 2e-13
Identities = 37/104 (35%), Positives = 55/104 (52%)
Frame = +2
Query: 260 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYA 439
A PG + ++VGDL P++ +IL E F+ G + + R+ RD T S GYA
Sbjct: 17 APQPGQNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYA 76
Query: 440 FVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 571
+V+F + ADAE A+ MN + L + +R WS R P + G
Sbjct: 77 YVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAG 120
Score = 56.4 bits (130), Expect = 2e-08
Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 5/154 (3%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKI-IREPG-NDPYAFLEFTCHXXXXXXXXXMN 220
+++ NLD + + F G++ CK+ I E G + Y F+ F +N
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 221 KRVVLDKEMKVN--WATSPGNQPKTDTSNHH-HIFVGDLSPEIETNILREAFAPFGEISN 391
++ K++ V + N+ +T+ +++V + L + FA FG I++
Sbjct: 182 GMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITS 241
Query: 392 CRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 493
C ++ KSKG+ FV+F +AE A+QA++
Sbjct: 242 CEVMTVEG--KSKGFGFVAFANPEEAETAVQALH 273
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 72.5 bits (170), Expect = 2e-13
Identities = 37/104 (35%), Positives = 55/104 (52%)
Frame = +2
Query: 260 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYA 439
A PG + ++VGDL P++ +IL E F+ G + + R+ RD T S GYA
Sbjct: 17 APQPGQNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYA 76
Query: 440 FVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 571
+V+F + ADAE A+ MN + L + +R WS R P + G
Sbjct: 77 YVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAG 120
Score = 49.6 bits (113), Expect = 2e-06
Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 33/183 (18%)
Frame = +2
Query: 44 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCHXXXXXXXXX 214
+LYVG+L P V E L F G V ++ R+ YA++ F
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 215 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHH-----HIFVGDLSPEIE------------ 343
MN + K M++ W+ ++ N +FVG P +
Sbjct: 93 MNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVFVGKFQPRAQRNRELGETAKQF 152
Query: 344 TNI-------------LREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 484
TN+ L + FA FG I++C ++ KSKG+ FV+F +AE A+Q
Sbjct: 153 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEG--KSKGFGFVAFANPEEAETAVQ 210
Query: 485 AMN 493
A++
Sbjct: 211 ALH 213
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 70.5 bits (165), Expect = 1e-12
Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 4/195 (2%)
Frame = +2
Query: 26 DESHPKT-LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXX 193
D KT L + L +T+ + +LF IG+++ CK++R+ Y F+ +
Sbjct: 36 DIGESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREED 95
Query: 194 XXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAP 373
N + +K +KV++A +P D +++V + + + L F P
Sbjct: 96 ALRAVSSFNGLRLQNKTIKVSYA-----RPSNDQIKGSNLYVSGIPKSMTLHELESIFRP 150
Query: 374 FGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPA 553
FG+I RI+ D T SKG FV F KK +A+ AI+ +NG S + PA
Sbjct: 151 FGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPSGCSEQITVKFANNPA 210
Query: 554 KGVNEGAPSSKRAKQ 598
+G S A Q
Sbjct: 211 SNNPKGLLSDLEAVQ 225
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/89 (33%), Positives = 53/89 (59%)
Frame = +2
Query: 281 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 460
P +DT+ + +FV +LS + + +L + F+ FG I N +I+RD T + KGYAFVS
Sbjct: 367 PPSDTAGYC-LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRD-LTQQCKGYAFVSMSNY 424
Query: 461 ADAEAAIQAMNGQWLGSRSIRTNWSTRKP 547
+A A+ ++NG L ++++ + + P
Sbjct: 425 TEAYNAMLSLNGTNLAGKTLQVVFKSSTP 453
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 67.3 bits (157), Expect = 9e-12
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Frame = +2
Query: 221 KRVVLDKEMKVNWATSPGNQPKTDTS------NHHHIFVGDLSPEIETNILREAFAPFGE 382
K+ + +++ K + S G Q D S N +F GDL E+ +L +AF +
Sbjct: 169 KKKIKEQQAKKKFVRSGGGQVWEDPSLAEWDENDFRVFCGDLGNEVSDELLAKAFRKYPS 228
Query: 383 ISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 544
++VR+ +T KSKGY FVSF D A++ M+G+++G+R I+ S K
Sbjct: 229 FQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLRKSAWK 282
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 60.9 bits (141), Expect = 8e-10
Identities = 31/73 (42%), Positives = 44/73 (60%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
I+VG +S EI ++LR AF PFG I + + DP T K +AFV + A A ++M
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 491 NGQWLGSRSIRTN 529
NGQ LG R+++ N
Sbjct: 164 NGQMLGGRNLKVN 176
Score = 58.0 bits (134), Expect = 6e-09
Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 17/181 (9%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXXXM 217
+YVG++ + E L F G +K + +P + +AF+E+ M
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 218 NKRVVLDKEMKVNWATS-----PGNQPKT---------DTSNHHHIFVGDLSPEIETNIL 355
N +++ + +KVN P N P+ D + ++V + P++ L
Sbjct: 164 NGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETDL 223
Query: 356 REAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 535
+ F FGEI C++ R P +G+ ++ F AI MN LG + +R N++
Sbjct: 224 KSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLR-NFT 282
Query: 536 T 538
T
Sbjct: 283 T 283
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 60.9 bits (141), Expect = 8e-10
Identities = 31/73 (42%), Positives = 44/73 (60%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
I+VG +S EI ++LR AF PFG I + + DP T K +AFV + A A ++M
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 491 NGQWLGSRSIRTN 529
NGQ LG R+++ N
Sbjct: 164 NGQMLGGRNLKVN 176
Score = 58.8 bits (136), Expect = 3e-09
Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 17/186 (9%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXXXM 217
+YVG++ + E L F G +K + +P + +AF+E+ M
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 218 NKRVVLDKEMKVNWATS-----PGNQPKT---------DTSNHHHIFVGDLSPEIETNIL 355
N +++ + +KVN P N P+ D + ++V + P++ L
Sbjct: 164 NGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETDL 223
Query: 356 REAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 535
+ F FGEI C++ R P +G+ ++ F AI MN LG + +R
Sbjct: 224 KSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLRVGKC 283
Query: 536 TRKPPA 553
P A
Sbjct: 284 VTPPDA 289
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 60.9 bits (141), Expect = 8e-10
Identities = 31/73 (42%), Positives = 44/73 (60%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
I+VG +S EI ++LR AF PFG I + + DP T K +AFV + A A ++M
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 491 NGQWLGSRSIRTN 529
NGQ LG R+++ N
Sbjct: 164 NGQMLGGRNLKVN 176
Score = 58.8 bits (136), Expect = 3e-09
Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 17/186 (9%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXXXM 217
+YVG++ + E L F G +K + +P + +AF+E+ M
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 218 NKRVVLDKEMKVNWATS-----PGNQPKT---------DTSNHHHIFVGDLSPEIETNIL 355
N +++ + +KVN P N P+ D + ++V + P++ L
Sbjct: 164 NGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETDL 223
Query: 356 REAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWS 535
+ F FGEI C++ R P +G+ ++ F AI MN LG + +R
Sbjct: 224 KSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLRVGKC 283
Query: 536 TRKPPA 553
P A
Sbjct: 284 VTPPDA 289
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 59.3 bits (137), Expect = 2e-09
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 2/151 (1%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 226
++VG + E LF + G V C I+R+ + C + +
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS---KGCCFVTFYHRKDAIEAQ 113
Query: 227 VVLDKEMKVNWATSPGNQPKTDTSNHHH--IFVGDLSPEIETNILREAFAPFGEISNCRI 400
L + P DT N + +F+G LS + LRE FA FG I +C +
Sbjct: 114 GALHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSV 173
Query: 401 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 493
+RD Q KS+G AFV+F ++ A A + M+
Sbjct: 174 LRD-QDGKSRGCAFVTFTNRSCAVVATKEMH 203
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/72 (34%), Positives = 39/72 (54%)
Frame = +2
Query: 308 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 487
++F+ L + + L FAPFG I + ++ D T SK + FVS+ A AI A
Sbjct: 500 NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISA 559
Query: 488 MNGQWLGSRSIR 523
MNG +GS+ ++
Sbjct: 560 MNGFQIGSKRLK 571
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +2
Query: 275 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 454
++P TD +FVG + + R F +G + +C I+RD T SKG FV+F
Sbjct: 48 SEPDTDAIK---MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
Query: 455 KKADAEAAIQAMN 493
+ DA A A++
Sbjct: 105 HRKDAIEAQGALH 117
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 26 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 181
+ + + L++G L E L +F + G ++ C ++R+ AF+ FT
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFT 190
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 59.3 bits (137), Expect = 2e-09
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 2/151 (1%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 226
++VG + E LF + G V C I+R+ + C + +
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS---KGCCFVTFYHRKDAIEAQ 113
Query: 227 VVLDKEMKVNWATSPGNQPKTDTSNHHH--IFVGDLSPEIETNILREAFAPFGEISNCRI 400
L + P DT N + +F+G LS + LRE FA FG I +C +
Sbjct: 114 GALHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSV 173
Query: 401 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 493
+RD Q KS+G AFV+F ++ A A + M+
Sbjct: 174 LRD-QDGKSRGCAFVTFTNRSCAVVATKEMH 203
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/72 (34%), Positives = 39/72 (54%)
Frame = +2
Query: 308 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 487
++F+ L + + L FAPFG I + ++ D T SK + FVS+ A AI A
Sbjct: 500 NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISA 559
Query: 488 MNGQWLGSRSIR 523
MNG +GS+ ++
Sbjct: 560 MNGFQIGSKRLK 571
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +2
Query: 275 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 454
++P TD +FVG + + R F +G + +C I+RD T SKG FV+F
Sbjct: 48 SEPDTDAIK---MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
Query: 455 KKADAEAAIQAMN 493
+ DA A A++
Sbjct: 105 HRKDAIEAQGALH 117
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 26 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 181
+ + + L++G L E L +F + G ++ C ++R+ AF+ FT
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFT 190
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 59.3 bits (137), Expect = 2e-09
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 2/151 (1%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 226
++VG + E LF + G V C I+R+ + C + +
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS---KGCCFVTFYHRKDAIEAQ 113
Query: 227 VVLDKEMKVNWATSPGNQPKTDTSNHHH--IFVGDLSPEIETNILREAFAPFGEISNCRI 400
L + P DT N + +F+G LS + LRE FA FG I +C +
Sbjct: 114 GALHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSV 173
Query: 401 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 493
+RD Q KS+G AFV+F ++ A A + M+
Sbjct: 174 LRD-QDGKSRGCAFVTFTNRSCAVVATKEMH 203
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/72 (34%), Positives = 39/72 (54%)
Frame = +2
Query: 308 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 487
++F+ L + + L FAPFG I + ++ D T SK + FVS+ A AI A
Sbjct: 429 NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISA 488
Query: 488 MNGQWLGSRSIR 523
MNG +GS+ ++
Sbjct: 489 MNGFQIGSKRLK 500
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +2
Query: 275 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 454
++P TD +FVG + + R F +G + +C I+RD T SKG FV+F
Sbjct: 48 SEPDTDAIK---MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
Query: 455 KKADAEAAIQAMN 493
+ DA A A++
Sbjct: 105 HRKDAIEAQGALH 117
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 26 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 181
+ + + L++G L E L +F + G ++ C ++R+ AF+ FT
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFT 190
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 59.3 bits (137), Expect = 2e-09
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 2/151 (1%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 226
++VG + E LF + G V C I+R+ + C + +
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS---KGCCFVTFYHRKDAIEAQ 113
Query: 227 VVLDKEMKVNWATSPGNQPKTDTSNHHH--IFVGDLSPEIETNILREAFAPFGEISNCRI 400
L + P DT N + +F+G LS + LRE FA FG I +C +
Sbjct: 114 GALHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSV 173
Query: 401 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 493
+RD Q KS+G AFV+F ++ A A + M+
Sbjct: 174 LRD-QDGKSRGCAFVTFTNRSCAVVATKEMH 203
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +2
Query: 275 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 454
++P TD +FVG + + R F +G + +C I+RD T SKG FV+F
Sbjct: 48 SEPDTDAIK---MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
Query: 455 KKADAEAAIQAMN 493
+ DA A A++
Sbjct: 105 HRKDAIEAQGALH 117
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 26 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 181
+ + + L++G L E L +F + G ++ C ++R+ AF+ FT
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFT 190
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 59.3 bits (137), Expect = 2e-09
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 2/151 (1%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 226
++VG + E LF + G V C I+R+ + C + +
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS---KGCCFVTFYHRKDAIEAQ 113
Query: 227 VVLDKEMKVNWATSPGNQPKTDTSNHHH--IFVGDLSPEIETNILREAFAPFGEISNCRI 400
L + P DT N + +F+G LS + LRE FA FG I +C +
Sbjct: 114 GALHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSV 173
Query: 401 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 493
+RD Q KS+G AFV+F ++ A A + M+
Sbjct: 174 LRD-QDGKSRGCAFVTFTNRSCAVVATKEMH 203
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +2
Query: 275 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 454
++P TD +FVG + + R F +G + +C I+RD T SKG FV+F
Sbjct: 48 SEPDTDAIK---MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
Query: 455 KKADAEAAIQAMN 493
+ DA A A++
Sbjct: 105 HRKDAIEAQGALH 117
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 26 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 181
+ + + L++G L E L +F + G ++ C ++R+ AF+ FT
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFT 190
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 59.3 bits (137), Expect = 2e-09
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 2/151 (1%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 226
++VG + E LF + G V C I+R+ + C + +
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS---KGCCFVTFYHRKDAIEAQ 113
Query: 227 VVLDKEMKVNWATSPGNQPKTDTSNHHH--IFVGDLSPEIETNILREAFAPFGEISNCRI 400
L + P DT N + +F+G LS + LRE FA FG I +C +
Sbjct: 114 GALHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSV 173
Query: 401 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 493
+RD Q KS+G AFV+F ++ A A + M+
Sbjct: 174 LRD-QDGKSRGCAFVTFTNRSCAVVATKEMH 203
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/72 (34%), Positives = 39/72 (54%)
Frame = +2
Query: 308 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 487
++F+ L + + L FAPFG I + ++ D T SK + FVS+ A AI A
Sbjct: 500 NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISA 559
Query: 488 MNGQWLGSRSIR 523
MNG +GS+ ++
Sbjct: 560 MNGFQIGSKRLK 571
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +2
Query: 275 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 454
++P TD +FVG + + R F +G + +C I+RD T SKG FV+F
Sbjct: 48 SEPDTDAIK---MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
Query: 455 KKADAEAAIQAMN 493
+ DA A A++
Sbjct: 105 HRKDAIEAQGALH 117
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 26 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 181
+ + + L++G L E L +F + G ++ C ++R+ AF+ FT
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFT 190
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 56.8 bits (131), Expect = 1e-08
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
+FVG++S ++ + +R F+ G + + ++V D +T K KGY F+ F AE AI+ +
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79
Query: 491 NGQWLGSRSIRTNWSTRKPPAKGVN-EGAPSSKRAKQPTFDEVY 619
NG L R +R + A G+N E SS A P + Y
Sbjct: 80 NGYELSGRILRVD-----SAAGGMNMEEFGSSSNAPAPVEENPY 118
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/65 (36%), Positives = 43/65 (66%)
Frame = +2
Query: 290 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 469
+ N IFVG L+ +++RE ++ FGEI++ ++RDP T +S+G+ FV+F K +
Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEV 77
Query: 470 EAAIQ 484
+AA++
Sbjct: 78 DAAMK 82
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/140 (18%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Frame = +2
Query: 41 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 220
+ ++VG L + T+ + + Q G++ ++R+P F M
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Query: 221 KR--VVLDKEMKVNWATSPGNQPKTDTS-NHHHIFVGDLSPEIETNILREAFAPFGEISN 391
+R ++ K + A ++ +++++ + ++V + + ++L E F +G ++
Sbjct: 83 QRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTK 142
Query: 392 CRIVRDPQTLKSKGYAFVSF 451
I+ D T K +G+ FV+F
Sbjct: 143 SEIILDKATQKPRGFGFVTF 162
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/65 (36%), Positives = 43/65 (66%)
Frame = +2
Query: 290 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 469
+ N IFVG L+ +++RE ++ FGEI++ ++RDP T +S+G+ FV+F K +
Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEV 77
Query: 470 EAAIQ 484
+AA++
Sbjct: 78 DAAMK 82
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/140 (18%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Frame = +2
Query: 41 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 220
+ ++VG L + T+ + + Q G++ ++R+P F M
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Query: 221 KR--VVLDKEMKVNWATSPGNQPKTDTS-NHHHIFVGDLSPEIETNILREAFAPFGEISN 391
+R ++ K + A ++ +++++ + ++V + + ++L E F +G ++
Sbjct: 83 QRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTK 142
Query: 392 CRIVRDPQTLKSKGYAFVSF 451
I+ D T K +G+ FV+F
Sbjct: 143 SEIILDKATQKPRGFGFVTF 162
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/65 (36%), Positives = 43/65 (66%)
Frame = +2
Query: 290 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 469
+ N IFVG L+ +++RE ++ FGEI++ ++RDP T +S+G+ FV+F K +
Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEV 77
Query: 470 EAAIQ 484
+AA++
Sbjct: 78 DAAMK 82
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/140 (18%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Frame = +2
Query: 41 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 220
+ ++VG L + T+ + + Q G++ ++R+P F M
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Query: 221 KR--VVLDKEMKVNWATSPGNQPKTDTS-NHHHIFVGDLSPEIETNILREAFAPFGEISN 391
+R ++ K + A ++ +++++ + ++V + + ++L E F +G ++
Sbjct: 83 QRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTK 142
Query: 392 CRIVRDPQTLKSKGYAFVSF 451
I+ D T K +G+ FV+F
Sbjct: 143 SEIILDKATQKPRGFGFVTF 162
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 56.4 bits (130), Expect = 2e-08
Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 5/154 (3%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKI-IREPG-NDPYAFLEFTCHXXXXXXXXXMN 220
+++ NLD + + F G++ CK+ I E G + Y F+ F +N
Sbjct: 59 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 118
Query: 221 KRVVLDKEMKVN--WATSPGNQPKTDTSNHH-HIFVGDLSPEIETNILREAFAPFGEISN 391
++ K++ V + N+ +T+ +++V + L + FA FG I++
Sbjct: 119 GMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITS 178
Query: 392 CRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 493
C ++ KSKG+ FV+F +AE A+QA++
Sbjct: 179 CEVMTVEG--KSKGFGFVAFANPEEAETAVQALH 210
Score = 55.6 bits (128), Expect = 3e-08
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 1/140 (0%)
Frame = +2
Query: 215 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 394
MN + K M++ W+ P S +IF+ +L I+ + + F+ FG I +C
Sbjct: 30 MNFEALHGKPMRIMWSQ---RDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSC 86
Query: 395 RIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRT-NWSTRKPPAKGVNEG 571
++ D SKGY FV F + A+ AIQ +NG L + + + R + + E
Sbjct: 87 KVAIDEDGF-SKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGET 145
Query: 572 APSSKRAKQPTFDEVYNQSS 631
A F + YN+ +
Sbjct: 146 AKQFTNVYVKNFGDHYNKET 165
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 461 ADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEG 571
ADAE A+ MN + L + +R WS R P + G
Sbjct: 21 ADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAG 57
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Frame = +2
Query: 317 VGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNG 496
+ +LS + N LR F +G+I + I RD + +SKG+ FV F ++ DAE A+ +G
Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82
Query: 497 QWLGSRSIRTNWSTRKPPA--KGVNEGAPSSKRAKQP 601
+ + R +R + P+ +G G +R++ P
Sbjct: 83 KLVDGRELRVTLAKYDRPSDERGGRGGGGGRRRSRSP 119
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 55.2 bits (127), Expect = 4e-08
Identities = 24/77 (31%), Positives = 47/77 (61%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
++VG++ + + FA G ++N RIV D +T + +G+AFV F ++A A+ A++ +
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQL 67
Query: 491 NGQWLGSRSIRTNWSTR 541
NG R++R N++ +
Sbjct: 68 NGVAFNGRNLRVNYANK 84
Score = 31.5 bits (68), Expect = 0.56
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +2
Query: 44 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXX 214
++YVGN+ TE + F +G V +I+ RE G +AF+EF+
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 215 MNKRVVLDKEMKVNWA 262
+N + ++VN+A
Sbjct: 67 LNGVAFNGRNLRVNYA 82
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 54.4 bits (125), Expect = 7e-08
Identities = 24/77 (31%), Positives = 44/77 (57%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
++VG+ + L F+ G+I+N RIV D +T + +G+AF+ F ++ A+ A++ M
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 491 NGQWLGSRSIRTNWSTR 541
NG R +R N + +
Sbjct: 67 NGAEFNGRPLRVNLANK 83
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/81 (28%), Positives = 45/81 (55%)
Frame = +2
Query: 239 KEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQT 418
+E ++N + G+ D +F+G LS + LR+ F FGE++ C ++RDP T
Sbjct: 26 EEARLNADSDDGSHGSQDPGK---MFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPAT 82
Query: 419 LKSKGYAFVSFVKKADAEAAI 481
+++G+ F++FV + + +
Sbjct: 83 KRARGFGFITFVDPSSVDKVL 103
Score = 50.8 bits (116), Expect = 8e-07
Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 6/152 (3%)
Frame = +2
Query: 14 ANMGDESH----PKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFT 181
A+ D SH P +++G L T L FG+ G+V C ++R+P F
Sbjct: 32 ADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFI 91
Query: 182 CHXXXXXXXXXMNKRV-VLD-KEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNIL 355
+N R LD K++ A Q K T +F+G LS +
Sbjct: 92 TFVDPSSVDKVLNNREHELDGKKIDPKVAFPKRTQAKLVTKT-KKVFIGGLSATSTLEDM 150
Query: 356 REAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 451
++ F +G++ + ++ D T + +G+ FV+F
Sbjct: 151 KQYFETYGKVEDAMLMFDKATQRHRGFGFVTF 182
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 52.8 bits (121), Expect = 2e-07
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Frame = +2
Query: 317 VGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNG 496
+ +LS + N LR F +G+I + I RD + +SKG+ FV F ++ DAE A+ +G
Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82
Query: 497 QWLGSRSIRTNWSTRKPPA--KGVNEGAPSSKR-AKQPTFDEV 616
+ + R +R + P+ +G G +R A +P E+
Sbjct: 83 KLVDGRELRVTLAKYDRPSDERGGRGGGGGRRRTAAEPDVAEL 125
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/80 (33%), Positives = 44/80 (55%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
++VG + ++ +L AF PFG++ I D ++ K +G+ FV F DA AI M
Sbjct: 13 LYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNM 72
Query: 491 NGQWLGSRSIRTNWSTRKPP 550
N L ++IR N++ +PP
Sbjct: 73 NESELFGKTIRVNFA--RPP 90
Score = 36.3 bits (80), Expect = 0.020
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = +2
Query: 41 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPG-NDPYAFLEFTCHXXXXXXXX 211
+TLYVG VTE L F GDV I E G + + F+EF
Sbjct: 11 RTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAID 70
Query: 212 XMNKRVVLDKEMKVNWATSP 271
MN+ + K ++VN+A P
Sbjct: 71 NMNESELFGKTIRVNFARPP 90
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/81 (28%), Positives = 45/81 (55%)
Frame = +2
Query: 239 KEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQT 418
+E ++N + G+ D +F+G LS + LR+ F FGE++ C ++RDP T
Sbjct: 26 EEARLNADSDDGSHGSQDPGK---MFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPAT 82
Query: 419 LKSKGYAFVSFVKKADAEAAI 481
+++G+ F++FV + + +
Sbjct: 83 KRARGFGFITFVDPSSVDKVL 103
Score = 50.8 bits (116), Expect = 8e-07
Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 6/152 (3%)
Frame = +2
Query: 14 ANMGDESH----PKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFT 181
A+ D SH P +++G L T L FG+ G+V C ++R+P F
Sbjct: 32 ADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFI 91
Query: 182 CHXXXXXXXXXMNKRV-VLD-KEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNIL 355
+N R LD K++ A Q K T +F+G LS +
Sbjct: 92 TFVDPSSVDKVLNNREHELDGKKIDPKVAFPKRTQAKLVTKT-KKVFIGGLSATSTLEDM 150
Query: 356 REAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 451
++ F +G++ + ++ D T + +G+ FV+F
Sbjct: 151 KQYFETYGKVEDAMLMFDKATQRHRGFGFVTF 182
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 52.0 bits (119), Expect = 4e-07
Identities = 25/73 (34%), Positives = 42/73 (57%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
++VG+ + + L F+ G +SN RIV D +T + +G+AFV F ++A A+ A+
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 491 NGQWLGSRSIRTN 529
NG R++R N
Sbjct: 66 NGVDFNGRALRVN 78
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 51.6 bits (118), Expect = 5e-07
Identities = 27/85 (31%), Positives = 48/85 (56%)
Frame = +2
Query: 281 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 460
PK + +FVG+L E++ L+E F+P G+I+ C L KG+AF+ +
Sbjct: 108 PKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAEC-------YLSGKGFAFLRLDTR 160
Query: 461 ADAEAAIQAMNGQWLGSRSIRTNWS 535
A AE+A +A++G+ + R +R ++
Sbjct: 161 AHAESAKEAIDGRIIHGRQVRVRFA 185
Score = 41.9 bits (94), Expect = 4e-04
Identities = 36/148 (24%), Positives = 63/148 (42%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 226
L+VGNL V E L LF GD+ C + +AFL ++ R
Sbjct: 118 LFVGNLPNEVKETELKELFSPHGDIAECYL----SGKGFAFLRLDTRAHAESAKEAIDGR 173
Query: 227 VVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 406
++ ++++V +A + I V +LSP + +L AF+ FG++ +
Sbjct: 174 IIHGRQVRVRFAV-----------HGAAIRVKELSPTVSNEMLYHAFSHFGDVERAVHIV 222
Query: 407 DPQTLKSKGYAFVSFVKKADAEAAIQAM 490
D + + G V F +K + A+ A+
Sbjct: 223 DEKG-RPTGEGIVEFERKPNCNEAMAAI 249
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 51.6 bits (118), Expect = 5e-07
Identities = 27/85 (31%), Positives = 48/85 (56%)
Frame = +2
Query: 281 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 460
PK + +FVG+L E++ L+E F+P G+I+ C L KG+AF+ +
Sbjct: 108 PKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAEC-------YLSGKGFAFLRLDTR 160
Query: 461 ADAEAAIQAMNGQWLGSRSIRTNWS 535
A AE+A +A++G+ + R +R ++
Sbjct: 161 AHAESAKEAIDGRIIHGRQVRVRFA 185
Score = 41.9 bits (94), Expect = 4e-04
Identities = 36/148 (24%), Positives = 63/148 (42%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 226
L+VGNL V E L LF GD+ C + +AFL ++ R
Sbjct: 118 LFVGNLPNEVKETELKELFSPHGDIAECYL----SGKGFAFLRLDTRAHAESAKEAIDGR 173
Query: 227 VVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 406
++ ++++V +A + I V +LSP + +L AF+ FG++ +
Sbjct: 174 IIHGRQVRVRFAV-----------HGAAIRVKELSPTVSNEMLYHAFSHFGDVERAVHIV 222
Query: 407 DPQTLKSKGYAFVSFVKKADAEAAIQAM 490
D + + G V F +K + A+ A+
Sbjct: 223 DEKG-RPTGEGIVEFERKPNCNEAMAAI 249
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +2
Query: 305 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 484
H I+VG + ++ + L F G+I + R++ DP + S+GYAFV++ K DA AA +
Sbjct: 200 HEIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAK 259
Query: 485 AMNGQWLGS-RSIRTNWS 535
+G + + + ++ N S
Sbjct: 260 TYDGHEISTGKPLKVNVS 277
Score = 32.7 bits (71), Expect = 0.24
Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 3/136 (2%)
Frame = +2
Query: 152 NDPYAFLEFTCHXXXXXXXXXMNKRVV--LDKEMKVNWATSPGNQPKTDT-SNHHHIFVG 322
N + F++F H + + + + ++ V+WA +P DT S +++
Sbjct: 324 NRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEHQ-EEPDEDTMSKVKVLYIR 382
Query: 323 DLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQW 502
++ + L E F + + + V+D YAF+ F ++ D A++ NG+
Sbjct: 383 NIKEAVTEEKLNELFKEYASLDRVKKVKD--------YAFIHFNERDDCLKAMEEWNGKE 434
Query: 503 LGSRSIRTNWSTRKPP 550
L + S KPP
Sbjct: 435 LEGTVVEA--SLAKPP 448
>U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical
protein C18A3.5c protein.
Length = 103
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/41 (60%), Positives = 29/41 (70%)
Frame = +2
Query: 17 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII 139
N DE P+TLYVGNLD +VTE F+ TLF QIG V K+I
Sbjct: 40 NGSDE--PRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI 78
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/73 (32%), Positives = 39/73 (53%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
I++G LS + + F+ +GE+ N ++RD T KSKG+AF+ + + A+
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNF 99
Query: 491 NGQWLGSRSIRTN 529
NG L R IR +
Sbjct: 100 NGISLHKRMIRVD 112
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCH 187
+Y+G L +++E + +F Q G+V +IR+ F C+
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCY 86
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 48.0 bits (109), Expect = 6e-06
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 3/161 (1%)
Frame = +2
Query: 41 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXX 211
K ++VG + P V L + F Q G+V ++ + N +AF+EFT
Sbjct: 29 KKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTT-GEGCKLAL 87
Query: 212 XMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 391
++ + K ++V A S N+ +FVG L + LR F FG++ +
Sbjct: 88 AAREQTIKGKSVEVKPAKSRENKK---------VFVGGLPSDYSEQDLRSHFEQFGKVDD 138
Query: 392 CRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSR 514
D QT + +AF+ F ++ A+ A + Q G+R
Sbjct: 139 IEWPFDKQTKARRNFAFIVFEEEESADKA-SSQTKQTFGTR 178
Score = 47.6 bits (108), Expect = 8e-06
Identities = 28/102 (27%), Positives = 46/102 (45%)
Frame = +2
Query: 275 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 454
N T + IFVG +SPE+ L F +GE++ ++ D +S+G+AFV F
Sbjct: 19 NGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFT 78
Query: 455 KKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 580
+ A+ A Q + +S+ + + K G PS
Sbjct: 79 TGEGCKLALAARE-QTIKGKSVEVKPAKSRENKKVFVGGLPS 119
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 48.0 bits (109), Expect = 6e-06
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 3/161 (1%)
Frame = +2
Query: 41 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXX 211
K ++VG + P V L + F Q G+V ++ + N +AF+EFT
Sbjct: 29 KKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTT-GEGCKLAL 87
Query: 212 XMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 391
++ + K ++V A S N+ +FVG L + LR F FG++ +
Sbjct: 88 AAREQTIKGKSVEVKPAKSRENKK---------VFVGGLPSDYSEQDLRSHFEQFGKVDD 138
Query: 392 CRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSR 514
D QT + +AF+ F ++ A+ A + Q G+R
Sbjct: 139 IEWPFDKQTKARRNFAFIVFEEEESADKA-SSQTKQTFGTR 178
Score = 47.6 bits (108), Expect = 8e-06
Identities = 28/102 (27%), Positives = 46/102 (45%)
Frame = +2
Query: 275 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 454
N T + IFVG +SPE+ L F +GE++ ++ D +S+G+AFV F
Sbjct: 19 NGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFT 78
Query: 455 KKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPS 580
+ A+ A Q + +S+ + + K G PS
Sbjct: 79 TGEGCKLALAARE-QTIKGKSVEVKPAKSRENKKVFVGGLPS 119
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 178 YVSHGGGHSAGRHEQASGPRQGNEG 252
Y S G +S ++QA G RQGN G
Sbjct: 266 YQSFAGNNSGFDYQQAQGARQGNNG 290
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 47.6 bits (108), Expect = 8e-06
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 8/158 (5%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPY---AFLEFTCHXXXXXXXXXM 217
L+VG + ++ E L LF Q G + I+++ + AFL + +
Sbjct: 31 LFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQATL 90
Query: 218 NKRVVL---DKEMKVNWATSPGN--QPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGE 382
+ + L ++ M+V A + PK D + +F+G LS + + +R FA FGE
Sbjct: 91 HDQKTLPGMNRAMQVKPADTDSRPASPK-DKMDDKKLFIGMLSKQQSEDEVRALFATFGE 149
Query: 383 ISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNG 496
+ ++R SKG AFV + DA AI A++G
Sbjct: 150 LDEVTVLRGADG-ASKGCAFVKYKHGLDAHMAISALHG 186
Score = 47.6 bits (108), Expect = 8e-06
Identities = 25/72 (34%), Positives = 41/72 (56%)
Frame = +2
Query: 308 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 487
++F+ L E L + FAPFG I + ++ D T +SK + FVS+ ++AAI A
Sbjct: 430 NLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAITA 489
Query: 488 MNGQWLGSRSIR 523
MNG +G + ++
Sbjct: 490 MNGFQIGMKRLK 501
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 47.6 bits (108), Expect = 8e-06
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 8/158 (5%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPY---AFLEFTCHXXXXXXXXXM 217
L+VG + ++ E L LF Q G + I+++ + AFL + +
Sbjct: 31 LFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQATL 90
Query: 218 NKRVVL---DKEMKVNWATSPGN--QPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGE 382
+ + L ++ M+V A + PK D + +F+G LS + + +R FA FGE
Sbjct: 91 HDQKTLPGMNRAMQVKPADTDSRPASPK-DKMDDKKLFIGMLSKQQSEDEVRALFATFGE 149
Query: 383 ISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNG 496
+ ++R SKG AFV + DA AI A++G
Sbjct: 150 LDEVTVLRGADG-ASKGCAFVKYKHGLDAHMAISALHG 186
Score = 47.6 bits (108), Expect = 8e-06
Identities = 25/72 (34%), Positives = 41/72 (56%)
Frame = +2
Query: 308 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 487
++F+ L E L + FAPFG I + ++ D T +SK + FVS+ ++AAI A
Sbjct: 430 NLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAITA 489
Query: 488 MNGQWLGSRSIR 523
MNG +G + ++
Sbjct: 490 MNGFQIGMKRLK 501
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 47.2 bits (107), Expect = 1e-05
Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 2/131 (1%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 226
++VG + E LF + G V C I+R+ + C + +
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS---KGCCFVTFYHRKDAIEAQ 113
Query: 227 VVLDKEMKVNWATSPGNQPKTDTSNHHH--IFVGDLSPEIETNILREAFAPFGEISNCRI 400
L + P DT N + +F+G LS + LRE FA FG I +C +
Sbjct: 114 GALHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSV 173
Query: 401 VRDPQTLKSKG 433
+RD Q KS+G
Sbjct: 174 LRD-QDGKSRG 183
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +2
Query: 275 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 454
++P TD +FVG + + R F +G + +C I+RD T SKG FV+F
Sbjct: 48 SEPDTDAIK---MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
Query: 455 KKADAEAAIQAMN 493
+ DA A A++
Sbjct: 105 HRKDAIEAQGALH 117
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/53 (20%), Positives = 23/53 (43%)
Frame = +2
Query: 26 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTC 184
+ + + L++G L E L +F + G ++ C ++R+ L C
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGMLSAAC 189
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/75 (34%), Positives = 38/75 (50%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
+FV L+P L F+ FG+I+NC IVRD ++ S YAF+ F E A M
Sbjct: 243 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKM 302
Query: 491 NGQWLGSRSIRTNWS 535
+ + R I ++S
Sbjct: 303 DNVLIDDRRIHVDFS 317
Score = 36.7 bits (81), Expect = 0.015
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = +2
Query: 26 DESHPKT-LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE--PGND-PYAFLEFTCHXX 193
DE P+ L+V L+P T+ L +F + G + C+I+R+ G+ YAF+EF
Sbjct: 235 DEVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKS 294
Query: 194 XXXXXXXMNKRVVLDKEMKVNWATS 268
M+ ++ D+ + V+++ S
Sbjct: 295 CEQAFFKMDNVLIDDRRIHVDFSQS 319
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/75 (34%), Positives = 38/75 (50%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
+FV L+P L F+ FG+I+NC IVRD ++ S YAF+ F E A M
Sbjct: 243 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKM 302
Query: 491 NGQWLGSRSIRTNWS 535
+ + R I ++S
Sbjct: 303 DNVLIDDRRIHVDFS 317
Score = 36.7 bits (81), Expect = 0.015
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = +2
Query: 26 DESHPKT-LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE--PGND-PYAFLEFTCHXX 193
DE P+ L+V L+P T+ L +F + G + C+I+R+ G+ YAF+EF
Sbjct: 235 DEVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKS 294
Query: 194 XXXXXXXMNKRVVLDKEMKVNWATS 268
M+ ++ D+ + V+++ S
Sbjct: 295 CEQAFFKMDNVLIDDRRIHVDFSQS 319
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/75 (34%), Positives = 38/75 (50%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
+FV L+P L F+ FG+I+NC IVRD ++ S YAF+ F E A M
Sbjct: 174 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKM 233
Query: 491 NGQWLGSRSIRTNWS 535
+ + R I ++S
Sbjct: 234 DNVLIDDRRIHVDFS 248
Score = 36.7 bits (81), Expect = 0.015
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = +2
Query: 26 DESHPKT-LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE--PGND-PYAFLEFTCHXX 193
DE P+ L+V L+P T+ L +F + G + C+I+R+ G+ YAF+EF
Sbjct: 166 DEVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKS 225
Query: 194 XXXXXXXMNKRVVLDKEMKVNWATS 268
M+ ++ D+ + V+++ S
Sbjct: 226 CEQAFFKMDNVLIDDRRIHVDFSQS 250
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/72 (34%), Positives = 39/72 (54%)
Frame = +2
Query: 308 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 487
++F+ L + + L FAPFG I + ++ D T SK + FVS+ A AI A
Sbjct: 336 NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISA 395
Query: 488 MNGQWLGSRSIR 523
MNG +GS+ ++
Sbjct: 396 MNGFQIGSKRLK 407
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/61 (39%), Positives = 31/61 (50%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
IFVG L L E F FG+I ++ D T KS+GY FV+ +A AE A +
Sbjct: 37 IFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDP 96
Query: 491 N 493
N
Sbjct: 97 N 97
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Frame = +2
Query: 263 TSP-GNQPKTDTS--NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKG 433
T+P G+Q D++ + ++++ L P ++LRE + +G I++ + + D T KG
Sbjct: 64 TAPRGDQQHHDSTPLSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKG 123
Query: 434 YAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKP 547
Y FV F A AA+ +N + + ++ + + P
Sbjct: 124 YGFVDFESPQAAAAAVDGLNTEGVQAQMAKLQQQEQDP 161
Score = 39.5 bits (88), Expect = 0.002
Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 3/153 (1%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXXXM 217
LY+ L P+ + L + + G++ K I + + Y F++F +
Sbjct: 83 LYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGL 142
Query: 218 NKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCR 397
N V + K+ Q + D +N +++ +L + +L FG + + R
Sbjct: 143 NTEGVQAQMAKLQ-------QQEQDPTN---LYIANLPLDFTEQMLETELNKFGMVISTR 192
Query: 398 IVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNG 496
I+R P +S+G F K E I A+NG
Sbjct: 193 ILRTPDN-QSRGVGFARMDSKEKCEVIISALNG 224
Score = 31.1 bits (67), Expect = 0.73
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 29 ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGN 154
E P LY+ NL TE L T + G V +I+R P N
Sbjct: 158 EQDPTNLYIANLPLDFTEQMLETELNKFGMVISTRILRTPDN 199
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/44 (40%), Positives = 33/44 (75%)
Frame = +2
Query: 353 LREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 484
+RE ++ FGEI++ ++RDP T +S+G+ FV+F K + +AA++
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 44
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/44 (40%), Positives = 33/44 (75%)
Frame = +2
Query: 353 LREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 484
+RE ++ FGEI++ ++RDP T +S+G+ FV+F K + +AA++
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 44
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/85 (24%), Positives = 42/85 (49%)
Frame = +2
Query: 293 TSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAE 472
T + ++++ L P ++LRE + +G I++ + + D T KGY FV F A
Sbjct: 103 TPSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAA 162
Query: 473 AAIQAMNGQWLGSRSIRTNWSTRKP 547
AA+ +N + + ++ + + P
Sbjct: 163 AAVDGLNTEGVQAQMAKLQQQEQDP 187
Score = 40.7 bits (91), Expect = 0.001
Identities = 44/211 (20%), Positives = 78/211 (36%), Gaps = 3/211 (1%)
Frame = +2
Query: 14 ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTC 184
+N LY+ L P+ + L + + G++ K I + + Y F++F
Sbjct: 98 SNFNTTPSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFES 157
Query: 185 HXXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREA 364
+N V + K+ Q + D +N +++ +L + +L
Sbjct: 158 PQAAAAAVDGLNTEGVQAQMAKLQ-------QQEQDPTN---LYIANLPLDFTEQMLETE 207
Query: 365 FAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 544
FG + + RI+R P +S+G F K E I A+NG + S K
Sbjct: 208 LNKFGMVISTRILRTPDN-QSRGVGFARMDSKEKCEVIISALNGGRFDTMSKEGPALLIK 266
Query: 545 PPAKGVNEGAPSSKRAKQPTFDEVYNQSSPT 637
G S+ R P+F + + PT
Sbjct: 267 QADTGRKSKVGSTSR--HPSFQQFSSLGGPT 295
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/77 (28%), Positives = 39/77 (50%)
Frame = +2
Query: 266 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFV 445
+P P+ + +FVG ++ E + LR F +G+I +V D + K +GYAF+
Sbjct: 91 NPAENPRASEDPYRTLFVGRINYETSESKLRREFEAYGKIKKLTMVHD-EAGKPRGYAFI 149
Query: 446 SFVKKADAEAAIQAMNG 496
+ KA+ A + +G
Sbjct: 150 EYSDKAEMHTAYKKADG 166
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 45.2 bits (102), Expect = 4e-05
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI--- 481
+F+G LS + L F+ +G + + ++RDP T S+G+ FV+F AE+A+
Sbjct: 51 LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDR 110
Query: 482 -QAMNGQWLGS-RSI-RTNWSTRKPPAKGVNEGAPSSK 586
+ G+ + S R+I R S+ PP + AP K
Sbjct: 111 PHKLGGKTVDSKRAIPREQMSSMIPPPFFETDPAPGCK 148
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 45.2 bits (102), Expect = 4e-05
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI--- 481
+F+G LS + L F+ +G + + ++RDP T S+G+ FV+F AE+A+
Sbjct: 71 LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDR 130
Query: 482 -QAMNGQWLGS-RSI-RTNWSTRKPPAKGVNEGAPSSK 586
+ G+ + S R+I R S+ PP + AP K
Sbjct: 131 PHKLGGKTVDSKRAIPREQMSSMIPPPFFETDPAPGCK 168
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 45.2 bits (102), Expect = 4e-05
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI--- 481
+F+G LS + L F+ +G + + ++RDP T S+G+ FV+F AE+A+
Sbjct: 72 LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDR 131
Query: 482 -QAMNGQWLGS-RSI-RTNWSTRKPPAKGVNEGAPSSK 586
+ G+ + S R+I R S+ PP + AP K
Sbjct: 132 PHKLGGKTVDSKRAIPREQMSSMIPPPFFETDPAPGCK 169
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 44.8 bits (101), Expect = 6e-05
Identities = 26/88 (29%), Positives = 42/88 (47%)
Frame = +2
Query: 272 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 451
G Q + S+ + V +L E+ + LR+ F G + I RD T KG+AFV+F
Sbjct: 165 GRQIDRNRSDENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTF 224
Query: 452 VKKADAEAAIQAMNGQWLGSRSIRTNWS 535
+ DA AI +N + ++ W+
Sbjct: 225 ESRDDAARAIAELNDIRMYHMVLKVEWT 252
>Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical
protein T11G6.8 protein.
Length = 408
Score = 44.4 bits (100), Expect = 7e-05
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Frame = +2
Query: 44 TLYVGNLDPS----VTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTC-HXXXXXXX 208
TLY+GNL PS VTE L F Q GD++ +++ E G AF+EFT
Sbjct: 236 TLYIGNLGPSGAQQVTEKDLNDFFYQYGDIRCLRVLTEKG---CAFIEFTTREAAERAAE 292
Query: 209 XXMNKRVVLDKEMKVNWATSPGNQPKTDTSNH 304
NK + K + + W P + D SN+
Sbjct: 293 RSFNKTFIKGKRLTIRWG-EPQAKRAADNSNY 323
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/86 (29%), Positives = 45/86 (52%)
Frame = +2
Query: 266 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFV 445
+PGN+ T H+ V +L P+I+ ++R+ F FG I + D +++G+A +
Sbjct: 120 APGNKGPT------HVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVD-SNRENRGFATI 172
Query: 446 SFVKKADAEAAIQAMNGQWLGSRSIR 523
+F DA+ + + +N L R IR
Sbjct: 173 TFRNADDAQKSCEQLNNFELAGRCIR 198
Score = 34.3 bits (75), Expect = 0.079
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 353 LREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWL 505
L E F+ G + + RI+ D +T +SKG +V F + + A+NGQ L
Sbjct: 41 LEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESVPLGL-ALNGQRL 90
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/86 (29%), Positives = 45/86 (52%)
Frame = +2
Query: 266 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFV 445
+PGN+ T H+ V +L P+I+ ++R+ F FG I + D +++G+A +
Sbjct: 265 APGNKGPT------HVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVD-SNRENRGFATI 317
Query: 446 SFVKKADAEAAIQAMNGQWLGSRSIR 523
+F DA+ + + +N L R IR
Sbjct: 318 TFRNADDAQKSCEQLNNFELAGRCIR 343
Score = 34.3 bits (75), Expect = 0.079
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 353 LREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWL 505
L E F+ G + + RI+ D +T +SKG +V F + + A+NGQ L
Sbjct: 186 LEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESVPLGL-ALNGQRL 235
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/76 (34%), Positives = 37/76 (48%)
Frame = +2
Query: 317 VGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNG 496
V +LS LR+ F FGEI+ C +V D + S+G+ F+ F DA AA +
Sbjct: 80 VFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIEDATAARDKLCN 139
Query: 497 QWLGSRSIRTNWSTRK 544
L IR ++S K
Sbjct: 140 TDLDGHKIRVDFSLTK 155
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAF-APFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 481
IFVG+L EI + L F A G + RIVRD T K KG+AFV+F + + A+
Sbjct: 248 IFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVSLAL 305
Score = 30.7 bits (66), Expect = 0.97
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +2
Query: 47 LYVGNLDPSVTEVFLCTLF-GQIGDVKGCKIIREPGNDP---YAFLEF 178
++VGNL +TE L T F QIG V+ +I+R+ +AF+ F
Sbjct: 248 IFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNF 295
>AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical
protein ZK616.1 protein.
Length = 491
Score = 42.7 bits (96), Expect = 2e-04
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Frame = +2
Query: 248 KVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGE-ISNCRIVRDPQTLK 424
KVN+A + SN ++FV +S ++ L +AF + + C +
Sbjct: 77 KVNFAKKEPKPAENVMSNISNVFVRGISRDMPDTELYQAFGGITDGVVQCHV-------- 128
Query: 425 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQPT 604
+ GY FV F +A+A+ I M+G+ L + I +W+ +P G P S+ + P+
Sbjct: 129 ADGYGFVLFDTRANAQKKIVEMDGKTLNGKLISVSWA--RPDTVGRKRKRPMSEESPTPS 186
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/100 (26%), Positives = 45/100 (45%)
Frame = +2
Query: 263 TSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAF 442
T P + + V ++ L+ F FG +S+ I+ + + SKG+ F
Sbjct: 139 TQPDPSTSSGPDGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGF 196
Query: 443 VSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGV 562
V+ + DAE A Q ++G + R I N +T + +K V
Sbjct: 197 VTMERPQDAERARQELHGSMIEGRKIEVNCATARVHSKKV 236
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/100 (26%), Positives = 45/100 (45%)
Frame = +2
Query: 263 TSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAF 442
T P + + V ++ L+ F FG +S+ I+ + + SKG+ F
Sbjct: 139 TQPDPSTSSGPDGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGF 196
Query: 443 VSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGV 562
V+ + DAE A Q ++G + R I N +T + +K V
Sbjct: 197 VTMERPQDAERARQELHGSMIEGRKIEVNCATARVHSKKV 236
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +2
Query: 365 FAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNG 496
F FG + R+ R+ +T KG+A+V F KA AE A ++MNG
Sbjct: 52 FRQFGNVLRIRVARNRRTGNHKGWAYVGFDNKAVAEIAAESMNG 95
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/74 (27%), Positives = 39/74 (52%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
+FV ++ E + + + F+ +G+I N + D +T KGYA V + + +A AI
Sbjct: 57 VFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQS 116
Query: 491 NGQWLGSRSIRTNW 532
N L ++++ +W
Sbjct: 117 NDTDLLGQNVKVDW 130
>Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical
protein ZK863.7 protein.
Length = 305
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/78 (29%), Positives = 41/78 (52%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
+FVG+L +++N L++ F PF +++ C IV K YAFV +++ D + I +
Sbjct: 5 LFVGNLPDNVDSNKLKQVFQPFCKVTECDIV--------KNYAFV-HIEEDDVDPIITRL 55
Query: 491 NGQWLGSRSIRTNWSTRK 544
G + + + ST K
Sbjct: 56 TGYTIDGKVVNIKKSTSK 73
>U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein.
Length = 305
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/78 (29%), Positives = 41/78 (52%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
+FVG+L +++N L++ F PF +++ C IV K YAFV +++ D + I +
Sbjct: 5 LFVGNLPDNVDSNKLKQVFQPFCKVTECDIV--------KNYAFV-HIEEDDVDPIITRL 55
Query: 491 NGQWLGSRSIRTNWSTRK 544
G + + + ST K
Sbjct: 56 TGYTIDGKVVNIKKSTSK 73
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/87 (31%), Positives = 42/87 (48%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
I++G L+ + + F +G+I RD L G+ FV F K DAE A+ +
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQI------RD--VLLKNGFGFVEFDDKRDAEDAVHDL 56
Query: 491 NGQWLGSRSIRTNWSTRKPPAKGVNEG 571
NG+ LG + ++S KP G + G
Sbjct: 57 NGKELGGERVILDYS--KPRGGGGDRG 81
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/87 (31%), Positives = 42/87 (48%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
I++G L+ + + F +G+I RD L G+ FV F K DAE A+ +
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQI------RD--VLLKNGFGFVEFDDKRDAEDAVHDL 56
Query: 491 NGQWLGSRSIRTNWSTRKPPAKGVNEG 571
NG+ LG + ++S KP G + G
Sbjct: 57 NGKELGGERVILDYS--KPRGGGGDRG 81
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/87 (31%), Positives = 42/87 (48%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
I++G L+ + + F +G+I RD L G+ FV F K DAE A+ +
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQI------RD--VLLKNGFGFVEFDDKRDAEDAVHDL 56
Query: 491 NGQWLGSRSIRTNWSTRKPPAKGVNEG 571
NG+ LG + ++S KP G + G
Sbjct: 57 NGKELGGERVILDYS--KPRGGGGDRG 81
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/86 (29%), Positives = 41/86 (47%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
+F+ +L + + L+ F +GE+S ++V D +T KG+A V FV A AA A+
Sbjct: 281 LFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSAL 340
Query: 491 NGQWLGSRSIRTNWSTRKPPAKGVNE 568
+G R + K +G E
Sbjct: 341 DGYVFKGRMMHILPGDEKRTKEGEEE 366
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 38.7 bits (86), Expect = 0.004
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Frame = +2
Query: 236 DKEMKVNWATSPGNQPKTDTS--NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRD 409
D E +P Q KTD S +F+ +LS + + +++E + FG+I I +
Sbjct: 238 DDEEPAKKPKNPKAQLKTDESITEGKVVFLRNLSYDTKEELIKEELSKFGKIDLAIICKY 297
Query: 410 PQTLKSKGYAFVSFVKKADAEAAIQAM-NGQWLGSRSIRTN 529
+ SKG AFV F +A I+ + +G + +R ++ N
Sbjct: 298 KDSGHSKGTAFVHFSTPIEASNCIEGVEDGVIIDNRLVKAN 338
Score = 35.9 bits (79), Expect = 0.026
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +2
Query: 404 RDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 544
+DP+T G+ F+ FV+KADAE + N + RS+ +W+ K
Sbjct: 131 KDPKTCA--GFGFIQFVEKADAEKGREFFNTNKVLGRSVAADWALDK 175
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
IF+G L + + ++E FG + + D Q SKGYAF ++ + AI +
Sbjct: 293 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQG-NSKGYAFAEYLDPTLTDQAIAGL 351
Query: 491 NGQWLGSRSI 520
NG LG + +
Sbjct: 352 NGMQLGDKQL 361
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +2
Query: 281 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 460
PK + +FVG+L E++ L+E F+P G+I+ C L KG+AF+ +
Sbjct: 108 PKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAEC-------YLSGKGFAFLRLISN 160
Query: 461 A 463
A
Sbjct: 161 A 161
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 38.7 bits (86), Expect = 0.004
Identities = 26/100 (26%), Positives = 45/100 (45%)
Frame = +2
Query: 260 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYA 439
A + Q KTD + ++VG++ + + + E FA G+++ I +D T K +A
Sbjct: 34 APTAEEQEKTDARS---VYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFA 90
Query: 440 FVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKG 559
FV F K + A+ ++G +R I P G
Sbjct: 91 FVEFQKLESVQLAL-VLSGTMFRNRKIMVTLKRTNKPGMG 129
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
IF+G L + + ++E FG + + D Q SKGYAF ++ + AI +
Sbjct: 293 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQG-NSKGYAFAEYLDPTLTDQAIAGL 351
Query: 491 NGQWLGSRSI 520
NG LG + +
Sbjct: 352 NGMQLGDKQL 361
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
IF+G L + + ++E FG + + D Q SKGYAF ++ + AI +
Sbjct: 268 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQG-NSKGYAFAEYLDPTLTDQAIAGL 326
Query: 491 NGQWLGSRSI 520
NG LG + +
Sbjct: 327 NGMQLGDKQL 336
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
IF+G L + + ++E FG + + D Q SKGYAF ++ + AI +
Sbjct: 271 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQG-NSKGYAFAEYLDPTLTDQAIAGL 329
Query: 491 NGQWLGSRSI 520
NG LG + +
Sbjct: 330 NGMQLGDKQL 339
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/76 (31%), Positives = 36/76 (47%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
++VG L + + L E F FG I + R P G+AFV + DAE A++A+
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPP-----GFAFVEYDDVRDAEDAVRAL 59
Query: 491 NGQWLGSRSIRTNWST 538
+G + R ST
Sbjct: 60 DGSRICGVRARVELST 75
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/76 (31%), Positives = 36/76 (47%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
++VG L + + L E F FG I + R P G+AFV + DAE A++A+
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPP-----GFAFVEYDDVRDAEDAVRAL 59
Query: 491 NGQWLGSRSIRTNWST 538
+G + R ST
Sbjct: 60 DGSRICGVRARVELST 75
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/76 (31%), Positives = 36/76 (47%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
++VG L + + L E F FG I + R P G+AFV + DAE A++A+
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPP-----GFAFVEYDDVRDAEDAVRAL 59
Query: 491 NGQWLGSRSIRTNWST 538
+G + R ST
Sbjct: 60 DGSRICGVRARVELST 75
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 37.9 bits (84), Expect = 0.006
Identities = 25/93 (26%), Positives = 41/93 (44%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
+F+G++ + E F G+I I +D T K K +A++ F + E A+ M
Sbjct: 57 VFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENAL-VM 115
Query: 491 NGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKR 589
NG SR I + ++ G+ G S R
Sbjct: 116 NGSLFRSRPIVV--TAKRTNIPGMGHGVRGSSR 146
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/74 (27%), Positives = 37/74 (50%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
++VG+LS + + + E F G++ + D G+ FV + + DAE A+Q +
Sbjct: 39 LYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAELALQNI 98
Query: 491 NGQWLGSRSIRTNW 532
+ + R IR +W
Sbjct: 99 SNTRMDDRVIRADW 112
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 44 TLYVGNLDPSVTEVFLCTLFGQIGDVK 124
TLYVGNL E + LFG+ GDV+
Sbjct: 38 TLYVGNLSYYTKEDQVYELFGRAGDVR 64
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 36.7 bits (81), Expect = 0.015
Identities = 25/97 (25%), Positives = 44/97 (45%)
Frame = +2
Query: 296 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEA 475
S ++VG+L ++ + + F +G I D ++ + +AFV F DAE
Sbjct: 6 SEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYV----DIKSGRGPAFAFVEFEDHRDAED 61
Query: 476 AIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSK 586
A++A +G R IR ++ +GV PS +
Sbjct: 62 AVRARDGYEFDGRRIRVEFT------RGVGPRGPSGR 92
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 32 SHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP-YAFLEFTCH 187
S + +YVGNL V E + +F + G +K I + G P +AF+EF H
Sbjct: 6 SEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI--KSGRGPAFAFVEFEDH 56
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 36.3 bits (80), Expect = 0.020
Identities = 21/80 (26%), Positives = 38/80 (47%)
Frame = +2
Query: 296 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEA 475
S ++VG+L ++ + + F +G I D ++ + +AFV F DAE
Sbjct: 6 SEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYV----DIKSGRGPAFAFVEFEDHRDAED 61
Query: 476 AIQAMNGQWLGSRSIRTNWS 535
A++A +G R IR ++
Sbjct: 62 AVRARDGYEFDGRRIRVEFT 81
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 32 SHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP-YAFLEFTCH 187
S + +YVGNL V E + +F + G +K I + G P +AF+EF H
Sbjct: 6 SEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI--KSGRGPAFAFVEFEDH 56
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 35.9 bits (79), Expect = 0.026
Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 2/114 (1%)
Frame = +2
Query: 266 SPGNQPKT-DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDP-QTLKSKGYA 439
SP P S + + +LS + L E F+ +G I N + D +GY
Sbjct: 119 SPRRSPAARSASPAKRVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYG 178
Query: 440 FVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRKPPAKGVNEGAPSSKRAKQP 601
+V + DAE +I+ M+G + ++ + + +P +R+ P
Sbjct: 179 YVEYDNLEDAEKSIKHMDGGQIDGMAVHVEMTIGRQSVPFQRRSSPFRRRSPPP 232
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 35.1 bits (77), Expect = 0.045
Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 1/158 (0%)
Frame = +2
Query: 26 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFTCHXXXXX 202
D+ +TL+VGN+ V E + +F + G V+ I D YAF+ F
Sbjct: 164 DDEATRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMF-----QTV 218
Query: 203 XXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGE 382
K D+ ++ + K+ S +FVG L + IL++AF FG
Sbjct: 219 DQAIQAKAEEQDRPIRAGGSRMKIGYGKSQVS--RRLFVGGLGSWCDKEILQKAFGEFGF 276
Query: 383 ISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNG 496
+ N I D + YA+V + ++ A +++ G
Sbjct: 277 VEN--IDYD----HGQPYAYVVYENTHTSQEACRSLRG 308
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 35.1 bits (77), Expect = 0.045
Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 1/158 (0%)
Frame = +2
Query: 26 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFTCHXXXXX 202
D+ +TL+VGN+ V E + +F + G V+ I D YAF+ F
Sbjct: 164 DDEATRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMF-----QTV 218
Query: 203 XXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGE 382
K D+ ++ + K+ S +FVG L + IL++AF FG
Sbjct: 219 DQAIQAKAEEQDRPIRAGGSRMKIGYGKSQVS--RRLFVGGLGSWCDKEILQKAFGEFGF 276
Query: 383 ISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNG 496
+ N I D + YA+V + ++ A +++ G
Sbjct: 277 VEN--IDYD----HGQPYAYVVYENTHTSQEACRSLRG 308
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 35.1 bits (77), Expect = 0.045
Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 1/158 (0%)
Frame = +2
Query: 26 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFTCHXXXXX 202
D+ +TL+VGN+ V E + +F + G V+ I D YAF+ F
Sbjct: 141 DDEATRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMF-----QTV 195
Query: 203 XXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGE 382
K D+ ++ + K+ S +FVG L + IL++AF FG
Sbjct: 196 DQAIQAKAEEQDRPIRAGGSRMKIGYGKSQVS--RRLFVGGLGSWCDKEILQKAFGEFGF 253
Query: 383 ISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNG 496
+ N I D + YA+V + ++ A +++ G
Sbjct: 254 VEN--IDYD----HGQPYAYVVYENTHTSQEACRSLRG 285
>Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical
protein C25A1.4 protein.
Length = 454
Score = 34.7 bits (76), Expect = 0.060
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
IF+ +L+ + T+ L E F G+I+ D + KSKG + + +A A+ +
Sbjct: 190 IFIANLAFNVGTDKLYEVFGMAGKITWMDFRIDKEG-KSKGVCVIQYTHPIEAVQAVSML 248
Query: 491 NGQWLGSRSI 520
NGQ L R++
Sbjct: 249 NGQRLFDRNL 258
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 33.9 bits (74), Expect = 0.10
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
+++G L + F +G++S+ + G+ FV F + DA+ A+ +
Sbjct: 4 VYIGRLPNRASDRDVEHFFRGYGKLSD--------VIMKNGFGFVDFQDQRDADDAVHDL 55
Query: 491 NGQWLGSRSIRTNWSTRKPPAKGVN-EGAPSSKRAKQPTF 607
NG+ L + + RK G N E + S R ++PTF
Sbjct: 56 NGKELCGERVILEFPRRK---VGYNEERSGSGFRGREPTF 92
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 33.9 bits (74), Expect = 0.10
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREA----FAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAA 478
+++ +L+ +I+ + LR++ F FGEI + R TLK +G A V F + A AA
Sbjct: 10 LYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFR---TLKMRGQAHVIFKELPAASAA 66
Query: 479 IQAMNG 496
+A+NG
Sbjct: 67 REALNG 72
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 33.9 bits (74), Expect = 0.10
Identities = 23/75 (30%), Positives = 37/75 (49%)
Frame = +2
Query: 305 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 484
+ IFVG LRE F F + + ++V+ +SKGY F++F + AE I+
Sbjct: 66 NRIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDG-QSKGYGFITFETEDQAE-EIR 123
Query: 485 AMNGQWLGSRSIRTN 529
+ + L RS + N
Sbjct: 124 KLTPKQLEFRSRKLN 138
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 33.9 bits (74), Expect = 0.10
Identities = 23/75 (30%), Positives = 37/75 (49%)
Frame = +2
Query: 305 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 484
+ IFVG LRE F F + + ++V+ +SKGY F++F + AE I+
Sbjct: 67 NRIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDG-QSKGYGFITFETEDQAE-EIR 124
Query: 485 AMNGQWLGSRSIRTN 529
+ + L RS + N
Sbjct: 125 KLTPKQLEFRSRKLN 139
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 398 IVRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTN 529
+V D + KG+A+V+F + AI +NG G+R ++ N
Sbjct: 43 LVHDRDSGSFKGFAYVTFENEQQMNTAISGLNGADFGNRVLKVN 86
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 32.3 bits (70), Expect = 0.32
Identities = 19/68 (27%), Positives = 37/68 (54%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
+++ +L +I T + E F FG + R +R T +++G AFV + DA+ A + +
Sbjct: 21 LYIKNLPYKITTEEMYEIFGKFGAV---RQIRVGNTAETRGTAFVVYEDIFDAKTACEHL 77
Query: 491 NGQWLGSR 514
+G + +R
Sbjct: 78 SGYNVSNR 85
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 31.5 bits (68), Expect = 0.56
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
++VG++ + + F G +S I D + KG+A+V F +K + A+ AM
Sbjct: 80 VYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNAL-AM 138
Query: 491 NGQWLGSRSIRTN-WSTRKPPAKGVN 565
L R I+ + T KP N
Sbjct: 139 TDSLLRGRQIKVDPKRTNKPGMSTTN 164
>AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical
protein K07H8.10 protein.
Length = 798
Score = 31.1 bits (67), Expect = 0.73
Identities = 31/131 (23%), Positives = 46/131 (35%), Gaps = 3/131 (2%)
Frame = +2
Query: 113 GDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTD 292
G V G R N + +L F ++K + K + V++ S PK
Sbjct: 571 GLVTGLDSFRRKKNSNFGWLVFNTVADCKKAHDVLSKSKIQGKALYVDFCLSESKAPKEH 630
Query: 293 ---TSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKA 463
N +F+ L L+ F +I P SK AF++F
Sbjct: 631 GVRPINPLQLFINALPGTCNNTDLKNIFRSSTDIKILHASGQPN---SKKRAFITFGTVE 687
Query: 464 DAEAAIQAMNG 496
DA+AA NG
Sbjct: 688 DAQAAFAKSNG 698
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/86 (22%), Positives = 37/86 (43%)
Frame = +2
Query: 287 TDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAD 466
+ T + V ++ + L F G + + I+ + + SKG+ FV+ D
Sbjct: 94 SSTDGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERG--SKGFGFVTMQNPDD 151
Query: 467 AEAAIQAMNGQWLGSRSIRTNWSTRK 544
A+ A NG + R + N +T++
Sbjct: 152 ADRARAEFNGTTIEGRRVEVNLATQR 177
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/86 (22%), Positives = 37/86 (43%)
Frame = +2
Query: 287 TDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAD 466
+ T + V ++ + L F G + + I+ + + SKG+ FV+ D
Sbjct: 94 SSTDGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERG--SKGFGFVTMQNPDD 151
Query: 467 AEAAIQAMNGQWLGSRSIRTNWSTRK 544
A+ A NG + R + N +T++
Sbjct: 152 ADRARAEFNGTTIEGRRVEVNLATQR 177
>Z73427-7|CAA97799.1| 371|Caenorhabditis elegans Hypothetical
protein F58B3.7 protein.
Length = 371
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 353 LREAFAPFGEISNCRI-VRDPQTLKSKGYAFVSFVKKADAEAAIQAMNGQWLGSRSI 520
++E G++ N + V + Q + FV F A A A MNG++ G RS+
Sbjct: 300 IKEEMEKCGQVVNVIVHVDESQEEDRQVRVFVEFTNNAQAIKAFVMMNGRFFGGRSV 356
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 425 SKGYAFVSFVKKADAEAAIQAMNGQWLGSRSIRTNWSTRK 544
SKG+ FV+ DA+ A NG + R + N +T++
Sbjct: 20 SKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQR 59
>U55370-7|AAA97998.2| 388|Caenorhabditis elegans Hypothetical
protein K03B4.1 protein.
Length = 388
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 26 DESH-PKTLYVGNLDPSVTEVFLCTLFGQ 109
D SH P T VGN P++T FL T FG+
Sbjct: 193 DSSHFPLTYLVGNSLPAITSPFLKTSFGE 221
>AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical
protein C07H6.4 protein.
Length = 933
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 26 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII 139
D+ + +YV N+ SVTE L FG G + KI+
Sbjct: 195 DDPYTTNVYVSNIPHSVTEDDLLFTFGSFGPLAALKIL 232
>Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical
protein T07F10.3 protein.
Length = 371
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +2
Query: 311 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 490
+++GD+ + L + F G + ++ R + KGY F+ F+ +A + +
Sbjct: 70 LWIGDVPTDWTEETLSQVFTECGH-APYKVKRVYVKDELKGYCFIEFITFDEARQTLYDL 128
Query: 491 NGQWL-GSRSIRTN 529
NG + G + IR N
Sbjct: 129 NGNRIPGFKDIRFN 142
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 353 LREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 484
L F +G I + + DP T +G+A ++F K A AI+
Sbjct: 41 LEHYFKRYGSIQSVNMFYDPDTGLHRGFASITFDSKDGANKAIE 84
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -3
Query: 314 ICDD---DY*CPSSAGYQDSSPN*PSFPCRGPLACSWRPALWPPPC 186
IC D Y C SA + D SP+ S P R C RP PP C
Sbjct: 1446 ICQDLPQGYTCQCSADFVDVSPHRASHPGR---LCQPRPTPPPPEC 1488
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -3
Query: 314 ICDD---DY*CPSSAGYQDSSPN*PSFPCRGPLACSWRPALWPPPC 186
IC D Y C SA + D SP+ S P R C RP PP C
Sbjct: 2030 ICQDLPQGYTCQCSADFVDVSPHRASHPGR---LCQPRPTPPPPEC 2072
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -3
Query: 314 ICDD---DY*CPSSAGYQDSSPN*PSFPCRGPLACSWRPALWPPPC 186
IC D Y C SA + D SP+ S P R C RP PP C
Sbjct: 1446 ICQDLPQGYTCQCSADFVDVSPHRASHPGR---LCQPRPTPPPPEC 1488
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -3
Query: 314 ICDD---DY*CPSSAGYQDSSPN*PSFPCRGPLACSWRPALWPPPC 186
IC D Y C SA + D SP+ S P R C RP PP C
Sbjct: 2030 ICQDLPQGYTCQCSADFVDVSPHRASHPGR---LCQPRPTPPPPEC 2072
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 431 GYAFVSFVKKADAEAAIQAMNGQWLGSRSI 520
G +V F+K+ DAE A +N +W + I
Sbjct: 120 GNVYVKFMKEEDAEKAKNDLNNRWFNGQPI 149
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -3
Query: 314 ICDD---DY*CPSSAGYQDSSPN*PSFPCRGPLACSWRPALWPPPC 186
IC D Y C SA + D SP+ S P R C RP PP C
Sbjct: 2030 ICQDLPQGYTCQCSADFVDVSPHRASHPGR---LCQPRPTPPPPEC 2072
>AF099919-4|AAC68791.1| 230|Caenorhabditis elegans Hypothetical
protein F40G9.12 protein.
Length = 230
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 430 GLCFCIICKESRCRSCHPGNE 492
G C CKE C++C P NE
Sbjct: 111 GKSVCEDCKEHECKACEPPNE 131
>Z74031-6|CAB54239.1| 227|Caenorhabditis elegans Hypothetical
protein F32D8.5b protein.
Length = 227
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -3
Query: 605 MLAVLLSYYWARLHSHPSLVVYALTSSYVWILIPAT 498
M+ VL SY W PS++++A+ ++ +L+ T
Sbjct: 92 MVPVLSSYLWEAAAERPSMMMFAIVANTFLVLLSFT 127
>Z74031-5|CAA98457.1| 225|Caenorhabditis elegans Hypothetical
protein F32D8.5a protein.
Length = 225
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -3
Query: 605 MLAVLLSYYWARLHSHPSLVVYALTSSYVWILIPAT 498
M+ VL SY W PS++++A+ ++ +L+ T
Sbjct: 90 MVPVLSSYLWEAAAERPSMMMFAIVANTFLVLLSFT 125
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/78 (25%), Positives = 32/78 (41%)
Frame = +2
Query: 41 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 220
+TL++ + ++ E L G+ K+I GN A++ M
Sbjct: 525 RTLWLKKIPTNIVENDLKQAVESCGEASRVKVI---GNRACAYITMENRRSANDVVSKMR 581
Query: 221 KRVVLDKEMKVNWATSPG 274
+ V K +KV WA SPG
Sbjct: 582 EVSVAKKMVKVYWARSPG 599
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 431 GYAFVSFVKKADAEAAIQAMNGQWLGSRSIR--TNWSTRKPPAKGVNEGAPSSKRAKQP 601
G+AFV F DAE A ++G+ + S+R + KP + +R++ P
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARGKPRGNDRHGSRSPRRRSRSP 94
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 431 GYAFVSFVKKADAEAAIQAMNGQWLGSRSIR--TNWSTRKPPAKGVNEGAPSSKRAKQP 601
G+AFV F DAE A ++G+ + S+R + KP + +R++ P
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARGKPRGNDRHGSRSPRRRSRSP 94
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 431 GYAFVSFVKKADAEAAIQAMNGQWLGSRSIR--TNWSTRKPPAKGVNEGAPSSKRAKQP 601
G+AFV F DAE A ++G+ + S+R + KP + +R++ P
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARGKPRGNDRHGSRSPRRRSRSP 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,824,107
Number of Sequences: 27780
Number of extensions: 375413
Number of successful extensions: 1362
Number of sequences better than 10.0: 125
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -