Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12d17
         (667 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    25   0.86 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   2.6  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   4.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.0  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 617 KLRQMLAVLLSYYWARLHSHPSLVVYALTSSY 522
           K+   + +L    WA  H+   L VYA  S Y
Sbjct: 270 KMLSAVVILFFICWAPFHTQRLLYVYAQESDY 301


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 300 LLVSVFGWLPGLVAQLTFISL 238
           L V+V  W  G+ A LT+ISL
Sbjct: 79  LFVTVPRWRNGIPATLTYISL 99


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 617 KLRQMLAVLLSYYWARLHSHPSLVVYALTSSY 522
           K ++ML      YW   H H   +V A+  +Y
Sbjct: 93  KKQEMLVRSAIKYWVERHKHIVRLVTAIGDAY 124


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 50  YVGNLDPSVTEVFLCTLFGQIGDVK 124
           YVG+ D  +  +   T +   GD+K
Sbjct: 797 YVGSEDSVIPRILYLTWYSSNGDIK 821


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,954
Number of Sequences: 438
Number of extensions: 4662
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)