Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12d15
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.1  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   7.1  
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.1  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 375  QAGIYLLFYTLFGSLPLL 428
            Q  IYLLF TL  +LP+L
Sbjct: 1360 QEEIYLLFKTLLNNLPIL 1377


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
 Frame = +3

Query: 288 LLLFYFFFEASLIPTXXXXXXXXYQ-PERIQAGIYLLFYTLFGSLPLLIGIIYIFXDLNT 464
           L LFY    AS I          Y+ P   +  +Y+ +++    L L +  +Y+  D  +
Sbjct: 122 LCLFYIKGHASSIRLQWIASPNAYELPSLNERFVYMTYFSHILILALTVEHLYLQRDSPS 181

Query: 465 ITIYFLKFFNMXMYLLXXSIXFA 533
             +  + FFN     L   I F+
Sbjct: 182 RPVINVSFFNYIFQNLGWLIRFS 204


>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 288 LLLFYFFFEASLIP 329
           L LF+FFFE+ L+P
Sbjct: 53  LFLFFFFFESFLLP 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 958,171
Number of Sequences: 5004
Number of extensions: 9899
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)