Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12d15
         (535 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0296 - 2303344-2303395,2303732-2304180,2304287-2304355,230...    27   7.2  
09_03_0154 + 12831120-12831222,12831761-12831858,12832019-128321...    27   9.5  

>05_01_0296 -
           2303344-2303395,2303732-2304180,2304287-2304355,
           2304539-2306546,2311181-2311425
          Length = 940

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 405 LFGSLPLLIGIIYIFXDLNTITIYFL 482
           +F SL L  GII+I   LN +T+YF+
Sbjct: 210 IFYSLVLAQGIIFICMLLNPLTVYFV 235


>09_03_0154 +
           12831120-12831222,12831761-12831858,12832019-12832195,
           12832307-12832407,12832503-12832578,12832665-12832724,
           12832810-12832994,12833078-12833174,12833279-12833365,
           12833453-12833511,12833617-12833708,12833821-12833898,
           12834000-12834160,12834267-12834485
          Length = 530

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 378 AGIYLLFYTLFGS-LPLLIGIIYIFXDLNTITIYFLKFFN 494
           AGI  LF T FGS LP+++G  Y F    TI+I     +N
Sbjct: 81  AGINTLFQTFFGSRLPVVMGGSYTFV-APTISIILAGRYN 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,909,502
Number of Sequences: 37544
Number of extensions: 42806
Number of successful extensions: 107
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)