Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt12d13
(625 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas... 360 e-100
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21... 338 3e-94
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 278 4e-76
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc... 192 3e-50
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa... 188 4e-49
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ... 183 2e-47
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 174 1e-44
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas... 172 3e-44
SPBC26H8.05c |||serine/threonine protein phosphatase |Schizosacc... 171 5e-44
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 132 5e-32
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 29 0.41
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po... 28 1.3
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 26 3.8
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 26 3.8
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 26 3.8
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 26 5.1
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 5.1
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 6.7
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po... 25 6.7
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 25 8.9
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 25 8.9
>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
PP1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 360 bits (885), Expect = e-100
Identities = 162/188 (86%), Positives = 175/188 (93%)
Frame = +3
Query: 60 ELNVDSLIHRLLEVRGCRPGKTVQMSEAEVRGLCTKSREIFLQQPILLELEAPLKICGDI 239
++++DS+I RLLEVRG RPG+ VQ+SE E+R LC K+REIF+ QPILLELEAPLKICGDI
Sbjct: 5 DVDLDSIIDRLLEVRGSRPGRQVQLSEDEIRFLCNKAREIFISQPILLELEAPLKICGDI 64
Query: 240 HGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNH 419
HGQY DLLRLFEYGGFPPEANYLFLGDYVDRGKQSLE ICLLLAYKIKYPENFF+LRGNH
Sbjct: 65 HGQYYDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLEVICLLLAYKIKYPENFFILRGNH 124
Query: 420 ECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQGMEQ 599
ECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIIDEKIF HGGLSPDL M+Q
Sbjct: 125 ECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIIDEKIFTMHGGLSPDLNSMDQ 184
Query: 600 IRRIMRPT 623
I+RIMRPT
Sbjct: 185 IQRIMRPT 192
>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
Sds21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 338 bits (832), Expect = 3e-94
Identities = 147/188 (78%), Positives = 171/188 (90%)
Frame = +3
Query: 60 ELNVDSLIHRLLEVRGCRPGKTVQMSEAEVRGLCTKSREIFLQQPILLELEAPLKICGDI 239
+ ++D++I +L++ R +P K VQ+S+AE+R LCT SR IFL QP+LLELEAPLKICGDI
Sbjct: 2 DYDIDAIIEKLVKARNGKPSKQVQLSDAEIRYLCTTSRSIFLSQPMLLELEAPLKICGDI 61
Query: 240 HGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNH 419
HGQY+DLLRLFEYGG+PP+ANYLFLGDYVDRGKQSLE ICLL AYKIKYPENFFLLRGNH
Sbjct: 62 HGQYSDLLRLFEYGGYPPDANYLFLGDYVDRGKQSLEVICLLFAYKIKYPENFFLLRGNH 121
Query: 420 ECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQGMEQ 599
E ASINRIYGFYDECKRRY+IKLWKTFTDCFNC+P+AA+IDEKIFC HGGLSPDL ++Q
Sbjct: 122 EFASINRIYGFYDECKRRYSIKLWKTFTDCFNCMPVAAVIDEKIFCMHGGLSPDLNSLDQ 181
Query: 600 IRRIMRPT 623
I+RI+RPT
Sbjct: 182 IQRIIRPT 189
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 278 bits (682), Expect = 4e-76
Identities = 127/188 (67%), Positives = 147/188 (78%), Gaps = 1/188 (0%)
Frame = +3
Query: 63 LNVDSLIHRLLEVRGCRPG-KTVQMSEAEVRGLCTKSREIFLQQPILLELEAPLKICGDI 239
LNVD +I RL+ V R K+V + AE+ +C REIFL QP LLEL P+KI GD+
Sbjct: 190 LNVDEMIQRLIHVGYSRKSSKSVCLKNAEITSICMAVREIFLSQPTLLELTPPVKIVGDV 249
Query: 240 HGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNH 419
HGQY+DL+RLFE GFPP +NYLFLGDYVDRGKQSLETI LL YKI+YPENFFLLRGNH
Sbjct: 250 HGQYSDLIRLFEMCGFPPSSNYLFLGDYVDRGKQSLETILLLFLYKIRYPENFFLLRGNH 309
Query: 420 ECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQGMEQ 599
ECA+I R+YGFYDECKRR NIK+WKTF + FNCLPIA+++ KIFC HGGLSP L M+
Sbjct: 310 ECANITRVYGFYDECKRRCNIKIWKTFINTFNCLPIASVVAGKIFCVHGGLSPSLSHMDD 369
Query: 600 IRRIMRPT 623
IR I RPT
Sbjct: 370 IREIPRPT 377
>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 192 bits (468), Expect = 3e-50
Identities = 81/167 (48%), Positives = 118/167 (70%), Gaps = 1/167 (0%)
Frame = +3
Query: 120 KTVQMSEAEVRGLCTKSREIFLQQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEA 299
K +SEA+V LC K+RE+ Q+ + + P+ +CGDIHGQ+ DL+ LF+ GG P+
Sbjct: 32 KCEPLSEADVEMLCDKAREVLCQENNVQPVRNPVTVCGDIHGQFHDLMELFKIGGDVPDM 91
Query: 300 NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY- 476
NYLF+GDYVDRG S+ET+ LL+A K++YP +LRGNHE I ++YGFYDEC R+Y
Sbjct: 92 NYLFMGDYVDRGYHSVETVSLLVAMKLRYPNRITILRGNHESRQITQVYGFYDECLRKYG 151
Query: 477 NIKLWKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQGMEQIRRIMR 617
+ +WK FT+ F+ P+ A+I+++IFC HGGLSP + ++ +R + R
Sbjct: 152 SANVWKHFTNLFDYFPLTALIEDRIFCLHGGLSPSIDSLDHVRTLDR 198
>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 188 bits (459), Expect = 4e-49
Identities = 78/163 (47%), Positives = 116/163 (71%), Gaps = 1/163 (0%)
Frame = +3
Query: 132 MSEAEVRGLCTKSREIFLQQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYLF 311
+SE +V +C ++E+ + + + P+ +CGDIHGQ+ DL+ LF GG P+ NYLF
Sbjct: 23 LSEEDVIQMCDLAKEVLSVESNVQSVRCPVTVCGDIHGQFHDLMELFNIGGPSPDTNYLF 82
Query: 312 LGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKL 488
+GDYVDRG S+ET+ LL+A+KI+YP+ +LRGNHE I ++YGFYDEC R+Y N +
Sbjct: 83 MGDYVDRGYHSVETVSLLIAFKIRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANV 142
Query: 489 WKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQGMEQIRRIMR 617
W+ FTD F+ LP+ A+I+++IFC HGGLSP + ++ +R + R
Sbjct: 143 WQYFTDLFDYLPLTALIEDRIFCLHGGLSPSIDTLDHVRILDR 185
>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 307
Score = 183 bits (445), Expect = 2e-47
Identities = 85/181 (46%), Positives = 122/181 (67%), Gaps = 1/181 (0%)
Frame = +3
Query: 63 LNVDSLIHRLLEVRGCRPGKTVQMSEAEVRGLCTKSREIFLQQPILLELEAPLKICGDIH 242
+++D++I RL E + ++E+ + LC+ ++E+ +Q+ ++ L P+ + GDIH
Sbjct: 2 IDLDNIIERLYEKQ--------LIAESVIAYLCSLAKEVLMQESNVVRLSTPITVVGDIH 53
Query: 243 GQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHE 422
GQ+ DLL +F GG P NYLFLGDYVDRG S+ETI LL+ K++YP+ LLRGNHE
Sbjct: 54 GQFDDLLEIFRIGGPCPYTNYLFLGDYVDRGYYSIETITLLICLKLRYPKRITLLRGNHE 113
Query: 423 CASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQGMEQ 599
I + YGFY EC R+Y N +WK FTD F+ L ++A ID+ IFC HGGLSP +Q ++Q
Sbjct: 114 SRGITQTYGFYSECLRKYGNANVWKYFTDIFDFLTLSATIDDTIFCVHGGLSPSIQHIDQ 173
Query: 600 I 602
I
Sbjct: 174 I 174
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 174 bits (423), Expect = 1e-44
Identities = 79/163 (48%), Positives = 109/163 (66%)
Frame = +3
Query: 129 QMSEAEVRGLCTKSREIFLQQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYL 308
++SE + + K+ EI + L+E++AP+ +CGDIHGQY DL++LFE GG P YL
Sbjct: 84 RLSEEQTLYIIKKATEILKSEDNLIEVDAPVTVCGDIHGQYYDLMKLFEVGGNPANTQYL 143
Query: 309 FLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKL 488
FLGDYVDRG S+E + L A KI YP+ +LLRGNHECA + + F EC +YNIK+
Sbjct: 144 FLGDYVDRGYFSIECLLYLWALKIWYPKTLWLLRGNHECAHLTDYFTFKLECTHKYNIKV 203
Query: 489 WKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQGMEQIRRIMR 617
++ FN LP+AAI++++ C HGGLSP+L + IR I R
Sbjct: 204 YEACLQSFNALPLAAIMNKQFLCVHGGLSPELHTLNDIRMINR 246
>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 172 bits (419), Expect = 3e-44
Identities = 76/167 (45%), Positives = 109/167 (65%), Gaps = 1/167 (0%)
Frame = +3
Query: 120 KTVQMSEAEVRGLCTKSREIFLQQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEA 299
K + E +++ LC + I +++ + + P+ +CGDIHGQ+ DLL LF GG P
Sbjct: 13 KCKYLPEHQLKRLCEMVKVILMEESNIQPVRTPVTVCGDIHGQFYDLLELFRVGGELPST 72
Query: 300 NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY- 476
NY+F+GD+VDRG SLET L + K +YP+ LLRGNHE I ++YGFYDEC+ +Y
Sbjct: 73 NYIFMGDFVDRGYFSLETFTLFMLLKARYPDKITLLRGNHESRQITQVYGFYDECQTKYG 132
Query: 477 NIKLWKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQGMEQIRRIMR 617
N +WK F+ L +AA+ID KI C HGGLSP+++ ++QIR + R
Sbjct: 133 NANVWKYCCQVFDFLTLAAVIDNKILCVHGGLSPEVRTLDQIRILAR 179
>SPBC26H8.05c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 171 bits (417), Expect = 5e-44
Identities = 77/161 (47%), Positives = 107/161 (66%), Gaps = 1/161 (0%)
Frame = +3
Query: 138 EAEVRGLCTKSREIFLQQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYLFLG 317
E+ V LC + R+I +++ + + +P+ ICGDIHGQ DLL LF GG P YLFLG
Sbjct: 21 ESNVVELCQRVRDILIEESNIQWISSPVTICGDIHGQLHDLLELFRIGGSCPGTKYLFLG 80
Query: 318 DYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWK 494
D+VDRG S+ET LLL K KYP+ L+RGNHE I ++YGFYDEC R+Y + +W+
Sbjct: 81 DFVDRGFYSVETFLLLLTLKCKYPKEMTLIRGNHESRQITQVYGFYDECVRKYGSANVWR 140
Query: 495 TFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQGMEQIRRIMR 617
+ F+ L + A++D K+FC HGGLSP + ++QIR + R
Sbjct: 141 YCCEIFDYLSLGALVDGKVFCVHGGLSPSISSIDQIRLLDR 181
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 132 bits (318), Expect = 5e-32
Identities = 65/155 (41%), Positives = 95/155 (61%), Gaps = 6/155 (3%)
Frame = +3
Query: 171 REIFLQQPILLEL----EAPLKICGDIHGQYTDLLRLFEYGGFPPEAN-YLFLGDYVDRG 335
+E+ + P L+++ + L ICGD HGQY DLL +F+ G P N YLF GD+VDRG
Sbjct: 192 KELLEKTPSLIDIPVKGDETLVICGDTHGQYFDLLNIFKLHGPPSPTNKYLFNGDFVDRG 251
Query: 336 KQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFN 515
S E L AYK+ YP+ F+ RGNHE +N++YGF EC+ +YN + + F++ F+
Sbjct: 252 SWSTEVAFTLYAYKLLYPDAVFINRGNHETDDMNKVYGFEGECRSKYNERTFNIFSETFS 311
Query: 516 CLPIAAIIDEKIFCCHGGL-SPDLQGMEQIRRIMR 617
LP+ ++I + HGGL S D ++Q+R I R
Sbjct: 312 LLPLGSLISDSYLVVHGGLFSDDNVTLDQLRNIDR 346
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 29.5 bits (63), Expect = 0.41
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +3
Query: 504 DCFNCLPIAAIIDEKIFCC-HGGLSPD 581
D ++C+ I A+ ++FCC HGGL+PD
Sbjct: 646 DPYSCVRILAL---ELFCCSHGGLTPD 669
>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 399
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 348 PVTVYHDLHSHQGISNWLLAEILHIQRDVANLCTD 244
P+T+ + +H HQ +SN E++ Q + L D
Sbjct: 129 PITIRNLIHRHQPLSNITNNELMKYQEEATQLAKD 163
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +3
Query: 381 KYPENFFLLRGNHECASINRI--YGFYD-ECKRRYNIKLWKTFTDCFNCLP 524
+Y + + LL+ + + I + + F D K Y +K W+ F CLP
Sbjct: 144 EYADKYRLLKNHKNVSGIVKATHFAFADIPEKSEYTLKQWRIFEKAAGCLP 194
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 282 GFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKY 386
GF + + L LG Y RGKQS + L ++ Y
Sbjct: 482 GFGEDLDCLILGGYFGRGKQSGKINSFLCGLRMDY 516
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 26.2 bits (55), Expect = 3.8
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = +3
Query: 144 EVRGLCTKSREIFLQQPILLELEAPLKICGDIHGQYTDLLRL------FEYGGFPPEANY 305
+V+ ++ +FL P + +LE L+ G + L RL EY P +
Sbjct: 123 QVKASPIDAQYVFLAPPSIEQLEVRLRGRGT-ENESAILQRLERARAEIEYSEKPGNFDA 181
Query: 306 LFLGDYVDRGKQSLETICL 362
L + D V++ + LE ICL
Sbjct: 182 LIVNDDVEKAYKQLEAICL 200
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 25.8 bits (54), Expect = 5.1
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 241 CISPQILSGASNSSNMGCCRNISLDFVQSPRTSASDICTVLPG 113
C + + S NSS+ C R+ L F S R IC PG
Sbjct: 218 CKTTPLQSREKNSSSFVCTRSSGLTFYDSKR---EKICFTFPG 257
>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 30 KFIRVVNMADELNVDSLIHRLLEVR 104
+ + V N D+LN D H+L EVR
Sbjct: 370 RLVDVSNTLDDLNKDMRFHKLSEVR 394
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.4 bits (53), Expect = 6.7
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 542 INYSSNWQAVKAIRESLPQFYIVSAFALVIKTINAVYA 429
+NYS NW VK I E A + K+I AVY+
Sbjct: 1344 VNYSKNWWNVK-ILEHFDFILDTEAASTFPKSITAVYS 1380
>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 6.7
Identities = 7/19 (36%), Positives = 16/19 (84%)
Frame = -3
Query: 542 INYSSNWQAVKAIRESLPQ 486
I+YS++W A++ ++ ++PQ
Sbjct: 123 ISYSAHWLAIEGVQPAIPQ 141
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 378 FCKPIGDR*SPVTVYHDLHSHQGISNW 298
F P GD + + VYH S +G ++W
Sbjct: 554 FTHPDGDHLTLLNVYHAYKSGEGTADW 580
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 99 VRGCRPGKTVQMSEAEVRGLCTKSREIFLQQPILLELEAPLKICGD 236
V G + V +S + + K R++ +Q P+ +E L IC D
Sbjct: 165 VEGLKRTMNVDISVSYLEIYNEKIRDLLVQDPLSMEKPKSLNICED 210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,948
Number of Sequences: 5004
Number of extensions: 62589
Number of successful extensions: 166
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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