Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12d10
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    27   2.0  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    26   3.6  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   4.7  

>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -1

Query: 591 LHEPLSQRWP*RFSQSDY 538
           LHEPLSQ W   FS S Y
Sbjct: 37  LHEPLSQGWLAAFSTSGY 54


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 5/101 (4%)
 Frame = +3

Query: 252 YVAGSIPLNVSMSEDKLKKVTIF-GAGLLVGTALAVIIPEGVRALFEHPHTPAVTKDYTA 428
           +  G +P  V  S D L   TI  G  L+V     +++P    A   H H   +   +  
Sbjct: 677 FEGGRVPSEV-YSLDNLPVGTIVNGPSLIVDKTQTIVVPPKAVARILHTHV-VIDISHGN 734

Query: 429 EPTHEDSLYSVIGI----TLVLGFVFMLLVDQMSSRYNDSS 539
           E T  DSL     I      V G  FM + +QM      +S
Sbjct: 735 EYTANDSLAKASTIDPIYLSVFGSRFMAVAEQMGRALQKTS 775


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 391  CSNNARTPSGMITAKAVPTSNPAPNIVT 308
            CS+ + +P+ + T KA  T  P P   T
Sbjct: 922  CSDGSLSPNTVTTTKATTTFTPTPTTTT 949


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,354,652
Number of Sequences: 5004
Number of extensions: 45420
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)