Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12d03
         (617 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.           142   8e-36
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    58   3e-10
U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette...    28   0.21 
U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette...    28   0.21 
U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette...    28   0.21 
AJ439060-5|CAD27756.1|  245|Anopheles gambiae putative deoxynucl...    23   6.0  
AF488801-1|AAO49462.1|  246|Anopheles gambiae multisubstrate deo...    23   6.0  

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score =  142 bits (344), Expect = 8e-36
 Identities = 68/144 (47%), Positives = 96/144 (66%)
 Frame = +1

Query: 184 FKFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNIGGKSTKLQIWDTAGQE 363
           FK +++G +  GKSSL+  F+  +F E +  TIG  F ++ + I   + K +IWDTAGQE
Sbjct: 25  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTLCIDDTTVKFEIWDTAGQE 84

Query: 364 RFRSVTRSYYRGAAGALLVYDITSRDSFNALANWLRDARTLASPNIVILLVGNKKDLEDS 543
           R+ S+   YYRGA  A++VYDI + DSF     W+++ +  ASPNIVI L GNK DL +S
Sbjct: 85  RYHSLAPMYYRGAQAAIVVYDIQNSDSFARAKTWVKELQRQASPNIVIALAGNKADLANS 144

Query: 544 REVTFTEASQFALENELMFLETSA 615
           R V + EA Q+A +N L+F+ETSA
Sbjct: 145 RVVDYEEAKQYADDNRLLFMETSA 168


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 57.6 bits (133), Expect = 3e-10
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
 Frame = +1

Query: 187 KFLVIGSAGTGKSSLLNNFIGNKFKEDRCHTIGVEFGSKIVNIGGKSTKLQIWDTAGQER 366
           K +V+G    GK+ +L ++  + F  +   T    + + +V + G    L +WDTAGQE 
Sbjct: 8   KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTSFDNYSAPMV-VDGVQVSLGLWDTAGQED 66

Query: 367 FRSVTRSYYRGAAGALLVYDITSRDSF-NALANWLRDARTLASPNIVILLVGNKKDLEDS 543
           +  +    Y      L+ Y + S  SF N  + W  + +    P+  I+LVG K DL + 
Sbjct: 67  YDRLRPLSYPQTDVFLICYSVASPSSFENVTSKWYPEIKH-HCPDAPIILVGTKIDLRED 125

Query: 544 REVTFTEASQ 573
           RE     A Q
Sbjct: 126 RETISLLADQ 135


>U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 28.3 bits (60), Expect = 0.21
 Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +1

Query: 127 NPTRLNLK-VTNMSESYEYLFKFLVIGSAGTGKSSLLN 237
           NP +  LK VT +++S E L    V+GS+G GK++LLN
Sbjct: 110 NPRKHLLKNVTGVAKSGELL---AVMGSSGAGKTTLLN 144


>U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 28.3 bits (60), Expect = 0.21
 Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +1

Query: 127 NPTRLNLK-VTNMSESYEYLFKFLVIGSAGTGKSSLLN 237
           NP +  LK VT +++S E L    V+GS+G GK++LLN
Sbjct: 110 NPRKHLLKNVTGVAKSGELL---AVMGSSGAGKTTLLN 144


>U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 673

 Score = 28.3 bits (60), Expect = 0.21
 Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +1

Query: 127 NPTRLNLK-VTNMSESYEYLFKFLVIGSAGTGKSSLLN 237
           NP +  LK VT +++S E L    V+GS+G GK++LLN
Sbjct: 88  NPRKHLLKNVTGVAKSGELL---AVMGSSGAGKTTLLN 122


>AJ439060-5|CAD27756.1|  245|Anopheles gambiae putative
           deoxynucleoside kinase protein.
          Length = 245

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 184 FKFLVIGSAGTGKSSLLNNF 243
           F   V G+ G+GK++ LN+F
Sbjct: 17  FTVFVEGNIGSGKTTFLNHF 36


>AF488801-1|AAO49462.1|  246|Anopheles gambiae multisubstrate
           deoxyribonucleoside kinaseprotein.
          Length = 246

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 184 FKFLVIGSAGTGKSSLLNNF 243
           F   V G+ G+GK++ LN+F
Sbjct: 17  FTVFVEGNIGSGKTTFLNHF 36


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 581,474
Number of Sequences: 2352
Number of extensions: 10984
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 60553008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)