Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12d03
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     24   1.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.6  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   9.6  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 7   NKIYSYQYRIYLLNKAIISKLQSYNVLILTK 99
           NK+      +++LN  II  +Q    +IL K
Sbjct: 195 NKLIEESKTVFILNNEIIRSIQGTGTIILKK 225


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 323  LPPMFTILEPNSTPIV 276
            +PP  T L PNST +V
Sbjct: 1501 IPPAATFLSPNSTTLV 1516


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 323  LPPMFTILEPNSTPIV 276
            +PP  T L PNST +V
Sbjct: 1497 IPPAATFLSPNSTTLV 1512


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +1

Query: 493 PNIVILLVGNKKDLEDSREVTFTEASQFALENELMFLETSA 615
           PN+  L +   KD++ + E+TF    Q +  +E   ++ ++
Sbjct: 598 PNLPKLALFATKDIKQNEEITFDYMCQSSKNSENSIMQRAS 638


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 347 SHICNLVDLPPMFTI 303
           S I NLV + P+FTI
Sbjct: 300 SGIFNLVKISPLFTI 314


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 339 LQLS*FATDVHNFGTKFNTNS 277
           L+L    +DVH+F + FN  S
Sbjct: 67  LKLRIRCSDVHHFESSFNAQS 87


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 347 SHICNLVDLPPMFTI 303
           S I NLV + P+FTI
Sbjct: 50  SGIFNLVKISPLFTI 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,290
Number of Sequences: 438
Number of extensions: 3201
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)