Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12c24
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    31   0.14 
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    29   0.58 
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    27   1.8  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    27   3.1  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   9.5  

>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = -3

Query: 314 NVAEEWLR--SRPQQGQNSCHDSH---RCGRDSQLPPEHIHLRQQRPQGGEEKE 168
           NVAE  L   S P+  +NS   S    + GRD +  P  +H   +RP+ GE+ E
Sbjct: 696 NVAETILEVTSSPKSSENSQKQSEITKKRGRDEEDEPSDLHSSPKRPKTGEDGE 749


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 579 SMPYR*RSCSAGTHRTFPEYNSSGTCTFLSSGTDRFVS-NQRFPVYK 442
           ++P R RS +   HR FP YN     T  SS  D   S + +FP ++
Sbjct: 460 ALPMRPRSQNVDKHRKFPYYNKRNAVTTPSSPYDGAQSGSPQFPPFE 506


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -3

Query: 185 GGEEKEEMRLYRQQAFVNLHFMQISLSDGVF 93
           GGE K+   L+  +AFV LH   I+ ++GVF
Sbjct: 650 GGEGKQGTILHIYRAFVFLHNRDIAENNGVF 680


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +3

Query: 246 AMGIVTAILPL----LWATAKPLFGYVVDYWPAHRKLV 347
           ++G VTA LP+    +  T  PL G VVD+   H K +
Sbjct: 656 SIGFVTATLPVGGVTIGITVTPLSGSVVDFLLKHSKTI 693


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 203 RQQRPQGGEEKEEMRLYRQQAFVNLHFMQISLSD 102
           +++R Q   EKEE +  RQ+  +N    Q+ L++
Sbjct: 144 KEERDQKLREKEEAQRLRQEQILNKERQQLKLNN 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,271
Number of Sequences: 5004
Number of extensions: 50938
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)