Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12c23
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    27   1.3  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   5.4  
SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyce...    25   7.2  
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   9.5  

>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 123 ICLIWSFWMLLSRVCFWCS*YRRTCL*RKVICLV--ITAETLLILVSSNFP 269
           + +IW  W+++  V F C  +    L + +IC    I+A  LL L+    P
Sbjct: 153 VVIIWLLWVVICFVLFGCIKFGNLNLDKALICSTCSISAALLLFLLYVRLP 203


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 97  FSSWSLLDKYV*FGRSGCYYLVC 165
           FS+W L+      G++ C Y +C
Sbjct: 424 FSNWMLVTGVTGIGKTSCLYAIC 446


>SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 252 VSSNFPTMQCLRRCPSDSFAPLVKLAFICQCGRRDLLTPRAESS 383
           + ++FP  +      +DS  P+V LA IC    RD+    A  S
Sbjct: 192 LQAHFPQAKVTVTKKADSLFPIVSLASICAKVTRDIQLECARES 235


>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = -1

Query: 403 LFLFIAHELSAR---GVKRSRRPH*QMKANLTKGAKESDGHLRKHCIVGKLEDTKIRSVS 233
           +FL  + E++ R   G   S   H  M A L K  K+S  HL+ HCI  K    K  ++S
Sbjct: 72  IFLASSCEITVRLSSGGHPSPPVHIYMSA-LIKVCKKSKPHLQTHCIKRKTYCVKHLAIS 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,157,843
Number of Sequences: 5004
Number of extensions: 41329
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)