Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12c23
         (538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0906 - 7124686-7124730,7124854-7124925,7125257-7125383,712...    29   3.1  
04_01_0288 + 3824337-3826385                                           28   4.1  
04_01_0278 + 3700974-3701672,3714653-3714841,3714954-3715814           28   4.1  

>01_01_0906 -
           7124686-7124730,7124854-7124925,7125257-7125383,
           7125424-7125572,7126126-7126465,7126759-7127090,
           7127327-7127860
          Length = 532

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 208 FLYKHVLLYYEHQKHTRDNN 149
           +LY+ +L+ Y+H+ H  DNN
Sbjct: 460 YLYRSILMTYKHKMHAVDNN 479


>04_01_0288 + 3824337-3826385
          Length = 682

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 202 YKHVLLYYEHQKHTRDNNIQNDQI 131
           ++H  + YEH +H  DN+  ND++
Sbjct: 176 HQHFYIKYEHPRHLGDNHGSNDEL 199


>04_01_0278 + 3700974-3701672,3714653-3714841,3714954-3715814
          Length = 582

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 202 YKHVLLYYEHQKHTRDNNIQNDQI 131
           ++H  + YEH +H  DN+  ND++
Sbjct: 176 HQHFYIKYEHPRHLGDNHGSNDEL 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,957,874
Number of Sequences: 37544
Number of extensions: 234715
Number of successful extensions: 427
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)