Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12c23
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97000-11|AAC47993.1|  321|Caenorhabditis elegans Serpentine rec...    32   0.30 
Z47745-1|CAA87663.1|  358|Caenorhabditis elegans Hypothetical pr...    30   0.92 
Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z54236-2|CAE46661.1|  313|Caenorhabditis elegans Hypothetical pr...    27   6.5  

>U97000-11|AAC47993.1|  321|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 33 protein.
          Length = 321

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +1

Query: 1   FLHAYVVHTQFYINLIRSFDRFSLVF 78
           F+H Y+ + QF++  + S +RFS++F
Sbjct: 94  FIHFYMAYAQFFLIFLTSLNRFSMIF 119


>Z47745-1|CAA87663.1|  358|Caenorhabditis elegans Hypothetical
           protein T19H5.2 protein.
          Length = 358

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 26/79 (32%), Positives = 36/79 (45%)
 Frame = +2

Query: 131 DLVVLDVIISCVFLVLIIQKDMFIEKSYLFSNHSRNTSDFSIFQFPHYAMFAKMSV*LLR 310
           D     VII  V  ++ I  D+FI +S+L    SRN    SI      A+  K  V  ++
Sbjct: 35  DFKTRKVIIVLVICLIFIITDLFIIRSHLHQISSRNQDTNSI-----SALLNKQGVTFVK 89

Query: 311 AFSQISLHLSVWAAGSLNT 367
             S  SL   ++A   LNT
Sbjct: 90  GMS--SLKYKIFAFAQLNT 106


>Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 1   FLHAYVVHTQFYINLIRSFDRFSLVF-PLQVQFF 99
           FLH Y  + Q+  N   S +RFSL+  P++ + F
Sbjct: 101 FLHYYFAYAQYIYNFFISLNRFSLITNPIKSELF 134


>Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 1   FLHAYVVHTQFYINLIRSFDRFSLVF-PLQVQFF 99
           FLH Y  + Q+  N   S +RFSL+  P++ + F
Sbjct: 101 FLHYYFAYAQYIYNFFISLNRFSLITNPIKSELF 134


>Z54236-2|CAE46661.1|  313|Caenorhabditis elegans Hypothetical
           protein C27B7.1b protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -2

Query: 201 INMSFCIMSTRNTHEIITSRT-TKSNIFI*KGPRTEELNLEWKDKTKSIKRPD 46
           +   F I+ T + +E  T+   TKS     + P TE   +EWK+  K   +P+
Sbjct: 117 LRSGFKIIMTFDPNEYFTNEVITKSYHLQSESPSTEITEIEWKENKKPPFKPE 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,789,846
Number of Sequences: 27780
Number of extensions: 229251
Number of successful extensions: 560
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)