Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12c16
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    29   0.32 
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    27   2.3  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    26   4.0  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   6.9  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    25   6.9  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   6.9  

>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -3

Query: 448 EDPTRSLNVRQMIYMLACDAIQYNKKVQKIPRDGSYNMKKTLQNYSFHDC 299
           EDPT ++ +++MI +++ DAI Y     K+   G+ N    L N     C
Sbjct: 553 EDPTANVLLKEMIALISSDAINYPFGNSKV--KGTANKVPDLSNEEIERC 600


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -3

Query: 475 PEIPTSYLLEDPTRSLNVR--QMIYMLACDAIQYNKKVQKIPRDGSYNMKKTLQ 320
           PEI    L ++     N     + Y+ + +     KKV+K PR   Y++KK+ Q
Sbjct: 57  PEIAERELTQEDIEFFNENPSSLKYLSSINPEDLGKKVEKGPRPDIYDLKKSQQ 110


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 222 FFSL*YLIPFVL*IVLNLCHILNL 293
           FFSL YL+PFV+   L++ H++ L
Sbjct: 179 FFSLHYLMPFVI-AALSVMHLIAL 201


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
 Frame = +2

Query: 155 FHMSDSLINFY*CEHIF-----LKCEIF-FLIIIFNTIC 253
           F+ SDS I +Y CE ++      K E+F +  +IF+ +C
Sbjct: 95  FNDSDSKIRYYACESMYNIGKVAKGEVFRYFNLIFDVLC 133


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = -3

Query: 523 RLST*LFLFDLYIGHFPEIPTSYLLEDPTRSLNVRQMIYMLACDAIQ--YNKKVQKIPRD 350
           +L+T + + +     FP +  S  +    R+   +  +Y    +A +  Y+ +V   PRD
Sbjct: 658 QLNTAIDILNFVTDRFPLLKGSTDVITNLRAFAEQSEVYQSRLNATEPAYSTQVPFFPRD 717

Query: 349 GSYNMKKTLQN 317
             Y+ +  LQN
Sbjct: 718 ADYHNQINLQN 728


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 56  FFFENRESFRVIMVNTFNVSGFKR 127
           F  E ++SF  +  N  N+S FKR
Sbjct: 149 FVIERKDSFTFLASNEKNISSFKR 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,209,433
Number of Sequences: 5004
Number of extensions: 45817
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)