Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12c16
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1301 - 29159262-29159810,29160360-29160493,29160615-291607...    28   4.0  
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249...    28   4.0  
02_01_0423 - 3092863-3094959                                           28   5.3  

>06_03_1301 -
           29159262-29159810,29160360-29160493,29160615-29160750,
           29161031-29161347,29161872-29161944
          Length = 402

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 227 EKISHILKICAHTSKNLSMNLTYGRIFHKLERILA*NHLH 108
           E+++ +   C   S+N  +  T GR+ H LE +LA +H H
Sbjct: 339 ERVARLAYDCL--SQNPKVRPTMGRVVHVLEAVLADHHHH 376


>01_06_1208 +
           35424241-35424370,35424415-35424728,35424782-35424967,
           35425361-35425523,35425601-35425787,35425875-35426016
          Length = 373

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -3

Query: 136 RGFSLKTTYIKSVHHDYTETF 74
           RG+++  T +K++HHDYTE +
Sbjct: 32  RGYTVHAT-VKNLHHDYTEPY 51


>02_01_0423 - 3092863-3094959
          Length = 698

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 20/76 (26%), Positives = 31/76 (40%)
 Frame = -3

Query: 451 LEDPTRSLNVRQMIYMLACDAIQYNKKVQKIPRDGSYNMKKTLQNYSFHDCFFKFSI*HR 272
           L + T SL + Q    L    I YN   + +P D      + L+ +S +DC     I   
Sbjct: 394 LTNITGSLQILQSCRNLTTLLIGYNFMQETMPEDDEIYGFENLRIFSLNDCSLSGKIPKW 453

Query: 271 LSTIYKTNGIKYYNEK 224
           LS +     +  YN +
Sbjct: 454 LSKLTNLEMLSLYNNQ 469


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,183,493
Number of Sequences: 37544
Number of extensions: 222184
Number of successful extensions: 459
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)