Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12c16
         (525 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81509-1|CAB04154.1|  332|Caenorhabditis elegans Hypothetical pr...    31   0.67 
Z68011-5|CAB60293.1|  332|Caenorhabditis elegans Hypothetical pr...    30   0.88 
Z68004-10|CAB60291.1|  332|Caenorhabditis elegans Hypothetical p...    30   0.88 
U50300-5|AAC48103.2|  337|Caenorhabditis elegans Serpentine rece...    30   0.88 
AF039036-5|AAB94164.2|  351|Caenorhabditis elegans Hypothetical ...    29   2.0  
U64841-2|AAB04846.2|  337|Caenorhabditis elegans Serpentine rece...    29   2.7  
Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ...    27   8.2  

>Z81509-1|CAB04154.1|  332|Caenorhabditis elegans Hypothetical
           protein F21A3.1 protein.
          Length = 332

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +2

Query: 218 IFFLIIIFNTI-CLVNCT*SMSYTKFEKTIVKTIILQCLFHIIRAITWYFLNFFIVLNS 391
           IF  +I +N    +V    S       +T +KTIILQ    +I  +    LNFF + NS
Sbjct: 209 IFVFLIYWNMRKSMVEVKMSKRTLDMHRTFLKTIILQVTIPLITVMGPLMLNFFTIYNS 267


>Z68011-5|CAB60293.1|  332|Caenorhabditis elegans Hypothetical
           protein T21B6.5 protein.
          Length = 332

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 176 INFY*CEHIFLKCEIFFLIIIFNTICLVNCT*SMSYTKFEKTIVKTIILQCLF 334
           INF  C  +     +F  +I FN +CL N   +  Y     T V T+IL  +F
Sbjct: 95  INFETCIDVLPLSIVFVAMISFNNLCLRNVGVAFYYVGRSITTVFTVILTYVF 147


>Z68004-10|CAB60291.1|  332|Caenorhabditis elegans Hypothetical
           protein T21B6.5 protein.
          Length = 332

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 176 INFY*CEHIFLKCEIFFLIIIFNTICLVNCT*SMSYTKFEKTIVKTIILQCLF 334
           INF  C  +     +F  +I FN +CL N   +  Y     T V T+IL  +F
Sbjct: 95  INFETCIDVLPLSIVFVAMISFNNLCLRNVGVAFYYVGRSITTVFTVILTYVF 147


>U50300-5|AAC48103.2|  337|Caenorhabditis elegans Serpentine
           receptor, class t protein18 protein.
          Length = 337

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 284 TKFEKTIVKTIILQCLFHIIRAITWYFLNFF 376
           TK + T++    L C FH   ++ + ++NFF
Sbjct: 252 TKMQATVLLQAFLFCFFHATSSVVYVYMNFF 282


>AF039036-5|AAB94164.2|  351|Caenorhabditis elegans Hypothetical
           protein E03D2.4 protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/51 (21%), Positives = 27/51 (52%)
 Frame = +2

Query: 224 FLIIIFNTICLVNCT*SMSYTKFEKTIVKTIILQCLFHIIRAITWYFLNFF 376
           ++ + ++ I  +  + SM   + ++ I+   ++ C FH I A  + ++ FF
Sbjct: 216 YIYLCYHLIYKIGYSSSMLLYRSKQQIIMQAVILCTFHAIAAYIYVYMQFF 266


>U64841-2|AAB04846.2|  337|Caenorhabditis elegans Serpentine
           receptor, class t protein14 protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +2

Query: 224 FLIIIFNTICLVNCT*SMSYTKFEKTIVKTIILQCLFHIIRAITWYFLNFF 376
           ++ + ++ I     T SM   K ++ I+   ++ C FH I A  + ++ FF
Sbjct: 195 YIYLCYHLIFKFGYTTSMWMYKTKQQIIIQAVILCSFHAIAAYIYVYMQFF 245


>Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical
           protein C33G3.6 protein.
          Length = 624

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -3

Query: 475 PEIPTSYLLEDPTRSLNVRQMIYMLACDAIQYNKKVQKIPRDGSYNMKKTLQNYS 311
           PE+  SY  +    S+N  Q  Y  + + I Y  + Q +  + SY  ++ L+N S
Sbjct: 297 PEMQKSYNNDYRQSSINSHQDKYENSSNGINYTDRNQDVYNNKSYGQQEWLKNTS 351


>Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical
           protein W01D2.4 protein.
          Length = 353

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +2

Query: 218 IFFLIIIFNTICLVNCT*SMSYTKFEKTIVKTIILQCLFHIIRAITWYFLNFF 376
           I +L + +  I     + SM   K ++ I+   I  C+FH   A  + ++ FF
Sbjct: 214 ILYLYLSYRLIFKFGYSTSMWLYKTKRQIIFQAISLCIFHATAAFIYEYMQFF 266


>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
           protein Y32B12B.4 protein.
          Length = 1528

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 496 DLYIGHFPEIPTSYLLEDPTRSLNVRQMIYMLACDAIQYNKKVQKIPRDG 347
           +L  G F ++P S++      + N  +  + +  D  Q  KK Q+I  DG
Sbjct: 14  ELLNGTFDDVPDSHVEPAQQTTANANEYGFTVINDFSQSQKKAQRILNDG 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,919,006
Number of Sequences: 27780
Number of extensions: 248117
Number of successful extensions: 668
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)