Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12c13
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    27   0.67 
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos...    26   2.0  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   2.0  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   2.7  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   3.5  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     24   8.2  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    24   8.2  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    24   8.2  
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    24   8.2  

>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 27.5 bits (58), Expect = 0.67
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +3

Query: 42  LLCSVAYGSNLTFPPGFKFGAASASYQVEGAWNVSDKGESIWDRLVHTKPEAIMD 206
           LL  +  G N    P  K G+ SAS++ + AW++  K  S   R   T  E   D
Sbjct: 496 LLQELISGINQKQKPSHKRGSLSASHKRDAAWSLLYKATSNKSRPTTTSTELKTD 550


>SPBC13G1.03c |pex14||peroxisomal membrane anchor
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 211 VRSIIASGLVWTSRSHMLSPLSLTFQAPS-TWYEAD 107
           +  +I++G  W++ S +   ++  F+APS   YEAD
Sbjct: 74  IMGVISTGFAWSAYSLVKKYIAPMFRAPSQNAYEAD 109


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 51  SVAYGSNLTFPPGFKFGAASASYQVEGAWNVSDKGESIW 167
           S  +G++L+F        AS+S  +E     SDK  SIW
Sbjct: 298 SSCFGNSLSFAASNGVDGASSSQVLENILVASDKEFSIW 336


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 192 EAIM-DLTNGDVTCDSYHLWERDIEMATELGLHFYRFSLSWPRLM 323
           EAIM DL   D+  D     E D+ +A     HF+ FS  +PR +
Sbjct: 299 EAIMSDLNFEDI--DEKKFEEIDLRLACCFESHFFAFSQHYPRYL 341


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 251 ERHRNGNGAWSTFLP 295
           ERH++ N  WST LP
Sbjct: 141 ERHKSTNDTWSTNLP 155


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
 Frame = +3

Query: 135 WNVSDKGESIWDRL----VHTKPEAI 200
           WN+ +  E++WD L    V+T+P  +
Sbjct: 275 WNIDELKETMWDYLNLVRVYTRPRGL 300


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 57  AYGSNLTFPPGFKFGAASASY 119
           AY + LT P GF+FG A+  Y
Sbjct: 178 AYFAGLTLP-GFEFGLATREY 197


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 126 EGAWNVSDKGESIWDR 173
           E + N  DKG  IWDR
Sbjct: 262 EQSQNTGDKGGGIWDR 277


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 41  FAVQCCLWLELNLPPGL*VRCS 106
           FAV C L   +N  PGL +R S
Sbjct: 399 FAVSCALLFVMNYIPGLSLRVS 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,501,251
Number of Sequences: 5004
Number of extensions: 29440
Number of successful extensions: 76
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)