Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt12c12
(539 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 29 0.58
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch... 27 2.3
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 27 2.3
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 2.3
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb... 26 3.1
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p... 26 4.1
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 25 5.4
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 7.2
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 25 7.2
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 25 7.2
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha... 25 7.2
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc... 25 7.2
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 25 9.5
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 25 9.5
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 28.7 bits (61), Expect = 0.58
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = -3
Query: 195 YATTSEELA--LNIINRALDV-PSSIAPTKGPNLPNW 94
Y T + EL I R+ + P SI+ GPN+PNW
Sbjct: 776 YTTKTGELISYTEFIERSRGIRPGSISTADGPNVPNW 812
>SPAC1805.02c |||electron transfer flavoprotein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 26.6 bits (56), Expect = 2.3
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +2
Query: 233 GWVEQDPYAILAVVKTCIEKAVENLVALGGNPEDIIAVGVTNQRETTIVWEQGT 394
G E +P ++ ++K +EK NLV LG D A + W Q T
Sbjct: 94 GEKELEPLSVAKLLKATVEKEKSNLVLLGKQAIDDDAHQTGGMLAAMLGWPQFT 147
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 395 GKPLYNAIVWLDMRTSSTIDKLLDTVPNKTRNKNYLKPLCGL-PLS 529
G+PL ++ R S D L VP T N+ + LC + PL+
Sbjct: 251 GRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLN 296
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/47 (21%), Positives = 24/47 (51%)
Frame = -3
Query: 453 SIVEDVLISSQTIALYKGFPVPCSQTIVVSLWFVTPTAIISSGFPPN 313
S+++DV + A++K FP+ + + ++ ++ I+ G N
Sbjct: 92 SLLQDVFSGTSAFAIFKRFPLTDTPLTLQNMLYINQLPILKGGHKSN 138
>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 351
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = -2
Query: 448 SGRCSHIQPNNCVVQRFPCALFPNYSCFSLVCDSNCYY 335
+ C Q NN + C++ N+S SL+ C Y
Sbjct: 227 AAECDAWQANNSELSSSICSISANWSTLSLLSTEGCVY 264
>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 539
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 412 VVQRFPCALFPNYSCFSLV 356
+V + PCAL PN +C +V
Sbjct: 178 IVLQIPCALAPNIACLLIV 196
>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -3
Query: 342 AIISSGFPPNATK--FSTAFSMHVLTTANIAYGSCSTQPS*G 223
AI+SS P + +T H L+T I YG T P G
Sbjct: 268 AIVSSSAPSSGVSSVLNTPTRPHALSTPRIRYGPQPTDPQFG 309
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 272 VKTCIEKAVENLVALGGNP 328
++T IEK + +VALGG P
Sbjct: 1519 IRTLIEKILLKVVALGGGP 1537
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/37 (27%), Positives = 17/37 (45%)
Frame = -3
Query: 429 SSQTIALYKGFPVPCSQTIVVSLWFVTPTAIISSGFP 319
++QT+++ P P + LW P I+ G P
Sbjct: 495 ANQTVSICGSLPEPAEKLTKAPLWVNVPETEIAVGMP 531
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 7.2
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +1
Query: 193 IPSKRVRTAFSSRRLGGARSVCNIGRS*NVHRKSSGEFGGIGG-KSRGYNSSWSHKPKRN 369
I + R FS+ R GG GR R G GG GG + RG + S P R
Sbjct: 431 IAGRPCRLDFSTPRTGGGSRG---GRGGFGGRGGFGGRGGFGGGRGRGRGGARSGNPNRG 487
Query: 370 NYSLGTRHRETF 405
+ + + ++ TF
Sbjct: 488 SVAPFSGNKVTF 499
>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 541
Score = 25.0 bits (52), Expect = 7.2
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -2
Query: 409 VQRFPCALFPNYSCFSLVCDS 347
+++ C +FP F VCDS
Sbjct: 36 IEKAECLIFPGVGNFGFVCDS 56
>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 348 PTAIISSGFPPNATKFSTAFSMHVLTTANIAYGS 247
PT +I F PN T + HVL +I + S
Sbjct: 355 PTGLIDKAFDPNITMNISKSPGHVLLLKDIKFSS 388
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 503 LGNFCFLFCLAPCQEACQ 450
LGN C++ C+ C AC+
Sbjct: 77 LGNTCYMNCVLQCLFACK 94
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +1
Query: 259 NIGRS*NVHRKSSGEFGGIGGKSRGYNSSWSHKPKRNNYS 378
N RS N S G G GG+SRG S + P N+YS
Sbjct: 931 NFPRS-NASYNSRGGHEGYGGRSRGGGYS-NGPPAGNHYS 968
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,889
Number of Sequences: 5004
Number of extensions: 54438
Number of successful extensions: 171
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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