Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt12c12
(539 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1370 - 32990002-32990244,32990950-32991943,32992019-329922... 131 3e-31
02_02_0392 - 9649858-9650405,9650499-9650670,9650788-9650926,965... 31 0.59
06_03_0675 - 23428948-23431389 29 1.8
03_05_0309 + 22990117-22990286,22990371-22990557,22990763-229908... 29 2.4
01_06_0158 - 27079262-27079346,27079662-27079750,27080540-270806... 29 2.4
01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036 29 2.4
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479... 29 3.1
07_01_1010 + 8561656-8561764,8563666-8563919,8564309-8564331,856... 28 4.1
02_02_0006 - 6037539-6038570 28 4.1
08_02_0261 + 15001603-15002217 28 5.5
02_02_0398 - 9777596-9778146,9778229-9778400,9778522-9778639,977... 28 5.5
11_06_0667 + 26071774-26072070,26072352-26073153,26073209-260734... 27 7.2
05_07_0145 + 28012268-28012624,28012734-28012794,28013758-280138... 27 7.2
02_02_0393 - 9711835-9712388,9712438-9712657,9713007-9713271,971... 27 7.2
06_03_0499 + 21461608-21463427,21463517-21463627,21463867-214641... 27 9.6
03_06_0102 + 31656268-31656304,31656625-31656920,31657967-31658080 27 9.6
>04_04_1370 -
32990002-32990244,32990950-32991943,32992019-32992240,
32993413-32993543
Length = 529
Score = 131 bits (317), Expect = 3e-31
Identities = 63/141 (44%), Positives = 91/141 (64%), Gaps = 1/141 (0%)
Frame = +2
Query: 119 VGAIDEGTSSARFIIFKANSSDVVAYHQKELEQHFPQEGWVEQDPYAILAVVKTCIEKAV 298
V +ID+GT+S RFI++ ++ V A HQ E +QH+P+ GWVE DP I+ VK C+ KA+
Sbjct: 7 VASIDQGTTSTRFIVYDRHAKPV-ASHQLEFKQHYPEAGWVEHDPMEIMESVKICMAKAL 65
Query: 299 ENLVALGGNPE-DIIAVGVTNQRETTIVWEQGTGKPLYNAIVWLDMRTSSTIDKLLDTVP 475
+ A G N + + A+G+TNQRETT++W + TG PLYNAIVW+D RTS +L +
Sbjct: 66 DKAAADGHNMDVGLKAIGITNQRETTVMWSKSTGLPLYNAIVWMDARTSPICRRLESDL- 124
Query: 476 NKTRNKNYLKPLCGLPLSPYF 538
+ + + CGL +S YF
Sbjct: 125 --SGGRTHFVETCGLAISTYF 143
>02_02_0392 -
9649858-9650405,9650499-9650670,9650788-9650926,
9651113-9651334,9651422-9651495,9653042-9653661,
9653810-9653965,9655250-9655347,9655443-9655534,
9655891-9655977
Length = 735
Score = 31.1 bits (67), Expect = 0.59
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Frame = +2
Query: 257 AILAVVKTCIEKAVENLVALGGNPEDIIAVGVTNQRETTIVWEQG----TGKPLYNAIVW 424
A+LA V I V+ L G P +I R T+V+ G T + + N + W
Sbjct: 266 AVLAAVDDAINDGVDVLSLSLGGPNEIHGTLHAVARGITVVFAGGNDGPTSQTVQNTVPW 325
Query: 425 LDMRTSSTIDKLLDTVPNKTRNKNYL 502
+ ++TID+ T + N+ L
Sbjct: 326 VITVAAATIDRTFPTTISLGNNEKLL 351
>06_03_0675 - 23428948-23431389
Length = 813
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 335 IIAVGVTNQRETTIVWEQGTGKPLY 409
I AV +N E T+VW G+P+Y
Sbjct: 61 IFAVWFSNSAEKTVVWSANLGRPVY 85
>03_05_0309 +
22990117-22990286,22990371-22990557,22990763-22990849,
22991101-22991346
Length = 229
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +2
Query: 380 WEQGTGKPLYNAIVWLDMRTSSTIDKLLDTVPNKTRNKNYLKPLCGLPLSP 532
W Q + + +V+L M T +DKL+ ++ +++ + P LPL P
Sbjct: 103 WRQNPASSIASCVVFLVMFTKDIVDKLV--AADQEASRDGMPPFGNLPLRP 151
>01_06_0158 -
27079262-27079346,27079662-27079750,27080540-27080659,
27080738-27080894,27081167-27081231,27081323-27081436,
27082109-27082178,27082412-27082642,27082963-27083039,
27083143-27083237,27084514-27084574,27084678-27085073
Length = 519
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -2
Query: 331 LWI-SPQCHQILHCFFYARFNYGQ 263
LW+ S +CH + C+F++R+ GQ
Sbjct: 122 LWVPSSKCHLSIACYFHSRYKAGQ 145
>01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036
Length = 1011
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +2
Query: 248 DPYAILAVVKTCIEKAVENLVALGGNPEDIIAVGVTNQRETTIVWEQGTGKPLYNA 415
D Y +L+ V+ I++ ++L ++ D+ AVG +Q + T W + + Y+A
Sbjct: 26 DKYVLLSGVRHEIQELKDDLESMNACLRDLAAVGDYHQSQQTRTWMKQVREVAYDA 81
>02_04_0625 -
24547435-24547569,24547674-24547742,24547871-24547997,
24548086-24548209,24548714-24548832,24548953-24549044,
24549124-24549329,24549429-24549534,24549636-24549740,
24549836-24549942,24550030-24550253,24550341-24550468,
24550945-24551022,24551338-24552012,24552655-24552798,
24552985-24553064,24553958-24554029,24554124-24554343,
24554460-24554590,24555118-24555243,24555567-24555695,
24556156-24556318,24556408-24556545,24557198-24557317,
24557521-24557682,24557751-24557876,24558172-24558342,
24558435-24558590,24559061-24559408
Length = 1526
Score = 28.7 bits (61), Expect = 3.1
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +2
Query: 125 AIDEGTSSARFII-FKANSSDVVAYHQKELEQHFPQEGWVEQDPYAILAVVKTCIEKAVE 301
A ++G+S + F ++S + +H+K++EQ V I+A + ++KA+E
Sbjct: 654 AFNDGSSPRLATLSFSSDSLRKLLFHRKKIEQETGARVSVSDGTVTIVAKTQPIMDKAIE 713
Query: 302 NLVALGGNPEDIIAVGVTNQRETTIVWEQG 391
+ L G I VG T + + + E G
Sbjct: 714 KVEFLVGRE---IEVGRTYKGVVSSIKEYG 740
>07_01_1010 +
8561656-8561764,8563666-8563919,8564309-8564331,
8564926-8564962,8565503-8565985
Length = 301
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 307 GGIGGKSRGYNSSWSHKPKRNN 372
GG GG RGY S SH P N
Sbjct: 50 GGGGGHGRGYTSHRSHNPNNPN 71
>02_02_0006 - 6037539-6038570
Length = 343
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +1
Query: 346 WSHKPKRNNY--SLGTRHRETFVQRNCLAGYENIFH 447
W P+ + Y SLG RH E + Q C + + FH
Sbjct: 15 WGDSPEPDEYYASLGLRHAEAYFQSPCGRLFTHSFH 50
>08_02_0261 + 15001603-15002217
Length = 204
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -3
Query: 384 SQTIVVSLWFVTPTAIISSGFPPNATKFSTAFSMHVLTTANIAYGSCSTQPS*G 223
S+ + +SL + S F P + S++ + + ++ N YGSC+T P G
Sbjct: 4 SRRVAISLLLLVAAMASSFSFSPCTAQSSSSCASYTFSS-NQQYGSCATLPRLG 56
>02_02_0398 -
9777596-9778146,9778229-9778400,9778522-9778639,
9778751-9779014,9779287-9779354,9779520-9780145,
9780257-9780412,9780528-9780625,9780741-9780832,
9780940-9781011
Length = 738
Score = 27.9 bits (59), Expect = 5.5
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Frame = +2
Query: 257 AILAVVKTCIEKAVENL-VALGGNPEDIIAVGVTNQRETTIVWEQGTGKP----LYNAIV 421
AILA + + V+ L +++GG E + R +V+ G P + N +
Sbjct: 263 AILAAIDDAMNDGVDVLSLSIGGAGEHYETLHAV-ARGIPVVFGGGNDGPTPQIVRNTVP 321
Query: 422 WLDMRTSSTIDKLLDTVPNKTRNKNYL 502
W+ +STID+ TV + NK ++
Sbjct: 322 WVITVAASTIDRAFPTVISLGNNKKFV 348
>11_06_0667 +
26071774-26072070,26072352-26073153,26073209-26073411,
26075078-26075521,26075703-26075758,26076323-26076402,
26077098-26077174,26077279-26078301
Length = 993
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 290 FLCTF*LRPILHTDLAPPN-LLEENAVLTLFD 198
+L T RP++H D+ P N LL+ N V L D
Sbjct: 289 YLHTHPTRPVIHRDIKPSNILLDSNWVTRLSD 320
>05_07_0145 +
28012268-28012624,28012734-28012794,28013758-28013852,
28013944-28014056,28014436-28014604,28014677-28014716,
28014797-28014861,28015485-28015598,28015687-28015751,
28015927-28016083,28016167-28016286,28016447-28016535,
28016631-28016715
Length = 509
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -2
Query: 331 LWI-SPQCHQILHCFFYARFNYGQ 263
LW+ S +C+ + CFF++R+ GQ
Sbjct: 109 LWVPSAKCYFSIACFFHSRYKSGQ 132
>02_02_0393 -
9711835-9712388,9712438-9712657,9713007-9713271,
9713409-9713476,9713587-9714209,9714307-9714462,
9714551-9714648,9714734-9714825,9714928-9715017
Length = 721
Score = 27.5 bits (58), Expect = 7.2
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Frame = +2
Query: 257 AILAVVKTCIEKAVENL-VALGGNPEDIIAVGVTNQRETTIVWEQGTGKPL----YNAIV 421
++LA + I V+ L ++LGG E + R T+V+ G P+ NA+
Sbjct: 268 SVLAAIDDAINDGVDVLSLSLGGYGE-VAGTLHAVARGITVVFAGGNEGPVPQSVSNAVP 326
Query: 422 WLDMRTSSTIDKLLDTV 472
W+ +STID+ TV
Sbjct: 327 WVITVAASTIDRSFPTV 343
>06_03_0499 + 21461608-21463427,21463517-21463627,21463867-21464143,
21464265-21464353,21464508-21464595,21464698-21464907,
21464985-21465110,21465429-21465620,21466532-21467188
Length = 1189
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 233 GWVEQDPYAILAVVKTCIEKAVENLVALGGNPEDIIAVGVTNQRETTIVW 382
GW+ Y+ LA+ I + + GG D+ AVG T T I+W
Sbjct: 992 GWMANGLYSSLAIFFLNICIFYDQAIRSGGQTADMAAVGTT--MFTCIIW 1039
>03_06_0102 + 31656268-31656304,31656625-31656920,31657967-31658080
Length = 148
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 286 RKSSGEFGGIGGKSRGYNSSW 348
R G FGG GG+S G+ W
Sbjct: 13 RGEGGNFGGGGGRSGGWRQRW 33
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,680,311
Number of Sequences: 37544
Number of extensions: 343595
Number of successful extensions: 1081
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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