Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12c12
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U38378-4|AAA79749.1|  502|Caenorhabditis elegans Hypothetical pr...   153   1e-37
U88181-3|AAB42302.2|  523|Caenorhabditis elegans Hypothetical pr...    38   0.005
Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domai...    29   1.6  
Z81571-7|CAB04620.1|  272|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AL132876-16|CAD21672.2|  406|Caenorhabditis elegans Hypothetical...    27   8.6  
AF043706-5|ABP57808.1|  536|Caenorhabditis elegans Hypothetical ...    27   8.6  
AF043706-4|AAU87803.1|  394|Caenorhabditis elegans Hypothetical ...    27   8.6  
AF043706-3|ABP57807.1|  534|Caenorhabditis elegans Hypothetical ...    27   8.6  
AF043703-7|AAY55881.1|   84|Caenorhabditis elegans Hypothetical ...    27   8.6  
AB096632-1|BAC76732.1|  500|Caenorhabditis elegans methionyl-tRN...    27   8.6  

>U38378-4|AAA79749.1|  502|Caenorhabditis elegans Hypothetical
           protein R11F4.1 protein.
          Length = 502

 Score =  153 bits (370), Expect = 1e-37
 Identities = 71/141 (50%), Positives = 99/141 (70%)
 Frame = +2

Query: 116 LVGAIDEGTSSARFIIFKANSSDVVAYHQKELEQHFPQEGWVEQDPYAILAVVKTCIEKA 295
           L+ AID+GTSS+RF++F+A++ ++V  HQ E+ Q FP  GWVE DP  +   V +CI K 
Sbjct: 3   LLAAIDQGTSSSRFLVFEADTGELVTSHQIEVRQLFPHGGWVEMDPMELYDTVVSCISKT 62

Query: 296 VENLVALGGNPEDIIAVGVTNQRETTIVWEQGTGKPLYNAIVWLDMRTSSTIDKLLDTVP 475
           +E L  LG + ++I +VGV NQRET+IVW++ TGKPLYNAIVWLD RTSS  D+ +    
Sbjct: 63  IEKLENLGISADEIKSVGVANQRETSIVWDKETGKPLYNAIVWLDTRTSSLADEAISRTA 122

Query: 476 NKTRNKNYLKPLCGLPLSPYF 538
           +K  +K+  +   GLP+ PYF
Sbjct: 123 SK--SKDEFRAKTGLPIHPYF 141


>U88181-3|AAB42302.2|  523|Caenorhabditis elegans Hypothetical
           protein C55B6.1a protein.
          Length = 523

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
 Frame = +2

Query: 128 IDEGTSSARFIIFKANSSDVVAYHQKELEQHFPQ---EGWVEQDPYAILAVVKTCIEKAV 298
           +D GT++ R +++ +   +  +Y +K    +  +   E  VE +P  +       I+KA 
Sbjct: 12  VDIGTTTIRSVVYDSKCKERGSYQEKVNTIYTTRNDDEVLVEIEPEQLFLQFLRVIKKAY 71

Query: 299 ENLVALGGNPEDIIAVGVTNQRETTIVWEQGTGKPLYNAIVWLDMRTSSTIDKLLDTVPN 478
           E L      P   + VG+  QR + ++W + T K     I W D R ++    L ++   
Sbjct: 72  ETLP-----PNAHVDVGLCTQRNSIVLWNKRTLKEETRIICWNDKRANNKCHNLNNSFLL 126

Query: 479 KTRN 490
           K  N
Sbjct: 127 KALN 130


>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 292 SSGEFGGIGGKSRGYNSSWSHKPKRNNYSLG 384
           S G +GG G + RGY  + +  PKR  Y  G
Sbjct: 519 SRGRYGGGGFQKRGYGGNDNFAPKRPRYDNG 549


>U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domain
           protein protein 1 protein.
          Length = 709

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 370 CFSLVCDSNCYYILWISPQCHQILHCFFYARF 275
           CF   C++N Y+ L    + H  L+C F   F
Sbjct: 603 CFCQNCNNNTYWCLRTKNETHNFLYCEFVTEF 634


>Z81571-7|CAB04620.1|  272|Caenorhabditis elegans Hypothetical
           protein M01G12.9 protein.
          Length = 272

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 116 LVGAIDEGTSSARFIIFKANSSDVVAYHQKELEQ 217
           ++GAI   T    FI+FK N   V+    KE  Q
Sbjct: 87  VIGAIPSSTGVENFIVFKTNDVQVIVKTPKEKGQ 120


>AL132876-16|CAD21672.2|  406|Caenorhabditis elegans Hypothetical
           protein Y105E8A.20 protein.
          Length = 406

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -3

Query: 459 SLSIVEDVLISSQTIALYKGFPVPCSQTIVVSLWF-VTPTAIISSGFP 319
           SL + ED+ IS     L  G PVP   T  + +W       +  +GFP
Sbjct: 94  SLEMSEDLSISRSRSRLSWGIPVPNDPTQTIYVWLDALVNYLTVTGFP 141


>AF043706-5|ABP57808.1|  536|Caenorhabditis elegans Hypothetical
           protein ZC123.4b protein.
          Length = 536

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -1

Query: 269 RPILHTDLAPPN-LLEENAVLTLFD 198
           + ILH DL P N LL+E+ VL L D
Sbjct: 347 KKILHRDLKPQNLLLDEDGVLKLAD 371


>AF043706-4|AAU87803.1|  394|Caenorhabditis elegans Hypothetical
           protein ZC123.4c protein.
          Length = 394

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -1

Query: 269 RPILHTDLAPPN-LLEENAVLTLFD 198
           + ILH DL P N LL+E+ VL L D
Sbjct: 191 KKILHRDLKPQNLLLDEDGVLKLAD 215


>AF043706-3|ABP57807.1|  534|Caenorhabditis elegans Hypothetical
           protein ZC123.4a protein.
          Length = 534

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -1

Query: 269 RPILHTDLAPPN-LLEENAVLTLFD 198
           + ILH DL P N LL+E+ VL L D
Sbjct: 331 KKILHRDLKPQNLLLDEDGVLKLAD 355


>AF043703-7|AAY55881.1|   84|Caenorhabditis elegans Hypothetical
           protein W10C8.6 protein.
          Length = 84

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -2

Query: 385 FPNYSCFSLVCDSNCYYILWISPQ-CHQILHCFFYAR 278
           F +  C S VC +   YI  I P  CH   +CF   R
Sbjct: 36  FKSRGCTSQVCLNILLYIFLIIPAYCHATWYCFIRGR 72


>AB096632-1|BAC76732.1|  500|Caenorhabditis elegans methionyl-tRNA
           synthetase (mitochondrial)protein.
          Length = 500

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -3

Query: 459 SLSIVEDVLISSQTIALYKGFPVPCSQTIVVSLWF-VTPTAIISSGFP 319
           SL + ED+ IS     L  G PVP   T  + +W       +  +GFP
Sbjct: 188 SLEMSEDLSISRSRSRLSWGIPVPNDPTQTIYVWLDALVNYLTVTGFP 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,827,034
Number of Sequences: 27780
Number of extensions: 315237
Number of successful extensions: 868
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)