Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12c12
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   1.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   1.5  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   2.0  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   3.5  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           22   3.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   3.5  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   3.5  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -2

Query: 424 PNNCVVQRFPCALFPNYSCFSLVCDSNCYYILWI 323
           P+N  V     + F    C S     NCYY  W+
Sbjct: 86  PSNLFVINLAISNFLMMFCMSPPMVINCYYETWV 119



 Score = 22.6 bits (46), Expect = 2.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 509 MALGNFCFLFCLAP 468
           +A+ NF  +FC++P
Sbjct: 94  LAISNFLMMFCMSP 107


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 19/59 (32%), Positives = 24/59 (40%)
 Frame = -2

Query: 430 IQPNNCVVQRFPCALFPNYSCFSLVCDSNCYYILWISPQCHQILHCFFYARFNYGQYCI 254
           + PNNC       A   + S ++LV  S      W      +I H FFY    YG Y I
Sbjct: 179 VDPNNC---DNTYAYISDLSGYALVVYS------WAKNDSWRITHNFFYFDPRYGNYNI 228


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -2

Query: 424 PNNCVVQRFPCALFPNYSCFSLVCDSNCYYILWI 323
           P+N  V     + F    C S     NCYY  W+
Sbjct: 52  PSNLFVINLAISDFLMMFCMSPPMVINCYYETWV 85


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 299 ENLVALGGNPEDIIAVGVT 355
           EN+   GGNP+ I  +G++
Sbjct: 191 ENIEWFGGNPKRITLIGLS 209


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 299 ENLVALGGNPEDIIAVGVT 355
           EN+   GGNP+ I  +G++
Sbjct: 62  ENIEWFGGNPKRITLIGLS 80


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 441 LPLLTSFLTRCQTKQETKIT*SHYVVF 521
           LP+ TS+ +    +QE K + SHY ++
Sbjct: 439 LPVHTSYKSGLNLEQEKKDSISHYHLY 465


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 299 ENLVALGGNPEDIIAVGVT 355
           EN+   GGNP+ I  +G++
Sbjct: 191 ENIEWFGGNPKRITLIGLS 209


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,933
Number of Sequences: 438
Number of extensions: 3914
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)