Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12c11
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       29   0.030
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             29   0.053
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   2.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   4.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.1  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 29.5 bits (63), Expect = 0.030
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = +1

Query: 373 DGFEDNIETIDSAEDAKNSQQDNARKTEDKDSDETVFDVLEPDSKEEPKLPPPIVEDEKK 552
           DG +DN +  D+    ++++ D  +KT     D    D  E    +E  +PP +  DEK 
Sbjct: 109 DG-DDNNDYEDNDYGNQDNRNDRRKKTFAAREDN---DEEEAQKPKEQYIPPELPNDEKS 164

Query: 553 IFLEAQEI 576
           +F    EI
Sbjct: 165 LFENGVEI 172


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 28.7 bits (61), Expect = 0.053
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +1

Query: 325 DNRDPDQENKEEIDSGDGFEDNIETIDSAEDAKNSQQDNARKTEDKDSDE 474
           D+RD D+EN+EE D G G  +  + +   EDA  +     R+ +D+ S E
Sbjct: 278 DDRDDDEENEEEED-GRGQSEAEKRLKLDEDADGAVSP-LRREKDRGSRE 325


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +1

Query: 328 NRDPDQENKEEIDSGDGFEDNIETIDSAEDAKNSQQDNAR 447
           NR    +  +   +G+   DN    +   D +N+Q DN R
Sbjct: 493 NRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNR 532


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 124 LKFQKIRTTSFWALLKHIIECFEFVL*CALACV 26
           L    IR  S +A+   +I C   V   A+AC+
Sbjct: 504 LAINHIRWNSAFAIAPAVISCLGIVATMAVACL 536


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 124 LKFQKIRTTSFWALLKHIIECFEFVL*CALACV 26
           L    IR  S +A+   +I C   V   A+AC+
Sbjct: 594 LAINHIRWNSAFAIAPAVISCLGIVATMAVACL 626


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 5/18 (27%), Positives = 13/18 (72%)
 Frame = -1

Query: 412 QQNQWFQCYLQNHHRCQF 359
           ++N WF  + ++H +C++
Sbjct: 421 RRNPWFVEFWEHHFQCRY 438


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.133    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,239
Number of Sequences: 438
Number of extensions: 1850
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)