Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12c10
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.5  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   3.3  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    26   5.7  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   7.6  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    25   7.6  

>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -1

Query: 431 LITQHFTSKF*YSYWLLVPICRPENV--LLASKFIKQYAYI 315
           +I QH T+K    + L  PI RP ++     +KFI+   YI
Sbjct: 1   MIVQHKTAKIEEDHGLFQPILRPSDISKTTDTKFIQSSPYI 41


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 363 RKCFIGIKVYKTIRVYLY-YI*SRLKYFSIKFIIYFPEK 250
           RKC IGIK ++ ++ Y++ Y   R     +K ++ F E+
Sbjct: 797 RKCVIGIKSFEKLQSYVFTYYCERYPKLILKRVLRFLEE 835


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 193 KYRVLLTSLMGSLTYFRVVFFWKINNKFNR 282
           KYR  +TS +G   Y  ++  WK   K  R
Sbjct: 482 KYRSFITSYIGIAAYVIMILGWKFTFKAKR 511


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 216 GSKEYPILTESLRNIRLVPT 157
           GS E PIL  +  NIRL P+
Sbjct: 92  GSLEIPILNSATSNIRLTPS 111


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = -1

Query: 662 DCKIIIYIFLVFCL--NLWSIRIFLLLRWVDELTACLPSVSWLLEPIDFYNVNVPPTLRY 489
           +C + I IFLV  +  NL+ +R+F  + +V  L   + +V +++  I   N    PT   
Sbjct: 188 NCAVWISIFLVVVIGINLFGVRVFGEVEFVLALIKVVATVGFIILAI-IINCGGVPTDHR 246

Query: 488 KF*GLSIV 465
            + G SI+
Sbjct: 247 GYIGGSII 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,650
Number of Sequences: 5004
Number of extensions: 52952
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)