Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12c10
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106           38   0.007
11_01_0557 + 4394754-4396040                                           38   0.010
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133...    31   1.1  
06_03_1084 + 27483276-27483492,27483991-27484121,27484685-274847...    29   3.4  
01_03_0287 - 14685536-14685697,14686536-14686686,14686778-146870...    29   3.4  
09_06_0242 - 21806370-21806483,21806574-21806660,21806865-218069...    28   5.9  
03_04_0162 + 17858802-17861168                                         28   7.8  
01_01_0483 - 3550429-3551184                                           28   7.8  

>12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106
          Length = 427

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = +2

Query: 68  VNHLDLSPHFAGVMLSITNFAGSIGSILTPVGTSLILRNDSVS 196
           VNH+D++P FAG+++ ++N AG++  I+    T  IL     S
Sbjct: 346 VNHMDVAPKFAGIVMGVSNTAGTLAGIVGVGLTGSILEGAKAS 388


>11_01_0557 + 4394754-4396040
          Length = 428

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 13/28 (46%), Positives = 23/28 (82%)
 Frame = +2

Query: 68  VNHLDLSPHFAGVMLSITNFAGSIGSIL 151
           VNH+D++P FAG+++ I+N AG++  I+
Sbjct: 347 VNHMDVAPKFAGIVMGISNTAGTLAGIV 374


>05_05_0059 +
           22011168-22011662,22012668-22012894,22013029-22013377,
           22013464-22013508,22013589-22013735,22013851-22013988,
           22014126-22014159,22014258-22014430
          Length = 535

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = +2

Query: 71  NHLDLSPHFAGVMLSITNFAGSIGSILTPVGTSLILR 181
           N  D++P +AG +  +TN  G++ +I++ +GT   ++
Sbjct: 465 NVQDIAPKYAGSLHGLTNGIGTVAAIVSTIGTGYFVQ 501


>06_03_1084 +
           27483276-27483492,27483991-27484121,27484685-27484740,
           27484834-27484891,27484970-27485113,27485270-27485353,
           27485434-27485514,27485776-27485889,27486196-27486281,
           27486376-27486436,27487343-27487525,27487987-27488038,
           27488080-27488135,27488197-27488258,27488498-27488581,
           27488899-27489030,27490220-27490316
          Length = 565

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/53 (39%), Positives = 26/53 (49%)
 Frame = -1

Query: 614 WSIRIFLLLRWVDELTACLPSVSWLLEPIDFYNVNVPPTLRYKF*GLSIVSYN 456
           W    F L+R  D+   CLPSV+W+LE      +     LRY   GL I  YN
Sbjct: 481 WLNETFHLIRCEDD---CLPSVNWVLE------LAKAAVLRYGVRGLVIDPYN 524


>01_03_0287 -
           14685536-14685697,14686536-14686686,14686778-14687016,
           14687895-14687974,14688358-14688493
          Length = 255

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -1

Query: 629 FCLNLWSIRIFLLLRWVDELTACLPSVSWLLEPIDF 522
           FC+  W    F    W  +L  C P V WLL  I F
Sbjct: 212 FCVGCWKTGFFGTSCW--QLAGCRPEVRWLLGGIFF 245


>09_06_0242 -
           21806370-21806483,21806574-21806660,21806865-21806917,
           21806999-21807140,21807406-21807501,21808617-21808785,
           21808859-21808939,21809032-21809106,21810322-21810387,
           21811013-21811158,21811898-21812344
          Length = 491

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 74  HLDLSPHFAGVMLSITNFAGSIGSILTPVGTSLIL 178
           H D+S  +A ++L ITN  G++  I+    T  +L
Sbjct: 413 HQDISREYASILLGITNTVGAVPGIVGVALTGYLL 447


>03_04_0162 + 17858802-17861168
          Length = 788

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 110 LSITNFAGSIGSILTPVGTSLILRNDSVSIG 202
           +++ ++AG I ++L   G   I+RN+S+S G
Sbjct: 636 IAVADYAGYICALLGDAGLGTIVRNESLSCG 666


>01_01_0483 - 3550429-3551184
          Length = 251

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 86  SPHFAGVMLSITNFAGSIGSILTPV 160
           SPH AG   +  N AGSIG+ + PV
Sbjct: 189 SPHTAGCYYARNNNAGSIGADVAPV 213


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,425,231
Number of Sequences: 37544
Number of extensions: 277666
Number of successful extensions: 519
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)