Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12c02
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    28   1.4  
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...    28   1.4  
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.9  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    27   2.5  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   4.4  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   4.4  
SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa...    25   7.7  

>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 541 FWKSFVNLYKVCIRSEKIYIYLRYLKTGLNINLHCTSRFEKILVLH 678
           FW SF   YKV +R + +Y YLR +   L+ +    S+   I  L+
Sbjct: 320 FWLSF---YKVSLRYDALYEYLRQIAEELDRSKFVLSQSRNIFSLY 362


>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 347 MPTHPQGTSCLSLAVVDGEIQTSQCNRRWYPE 252
           +PT+P G+    +A  D  I  S+  R+W PE
Sbjct: 233 IPTYPSGSIGFVVASKDASIDLSKPLRKWSPE 264


>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 230 HAPHLGGRLTNTANGSPMLHSVKFI-ENSCHWLSKTG 123
           H P+ G   TN  NG P+ +S K I + S  + S  G
Sbjct: 120 HVPYYGSAGTNALNGGPLSNSRKLIPKRSAKFSSMVG 156


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 586 EKIYIYLRYLKTGLNINLHCTSRFEKILVLH 678
           EKI   L++L+  L+I   C S  EKI+ L+
Sbjct: 115 EKISTMLQHLQMRLSIEQQCVSGIEKIMSLY 145


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 245 PFKALHAPHLGGRLTNTANGSP 180
           P+KA   PHLG R +  A   P
Sbjct: 218 PYKAYPQPHLGHRFSRNAGNDP 239


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 523 YDVFPPFWKSFVNLYKVCIRSEKIYIYLRYLKTGL 627
           YD   P WK    +    ++  K+ IY R + TGL
Sbjct: 830 YDELVPNWKETYQMEITNVKRFKLIIYQRNIHTGL 864


>SPAC31G5.18c |||ubiquitin family, human C1ORF55
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 285 NITMQSAVVSGDGTFQSVTRAALGRSINEHSQR 187
           N+T+ + V+ G G F S  RAA GR   + +++
Sbjct: 74  NLTLCTRVLGGKGGFGSQLRAAGGRMSKKRNEQ 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,108
Number of Sequences: 5004
Number of extensions: 59961
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)