Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12c02
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0697 + 26371193-26371397,26371562-26374254                       29   3.4  
12_02_0302 + 17079987-17080778                                         28   7.9  

>11_06_0697 + 26371193-26371397,26371562-26374254
          Length = 965

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 184 PLCYIVSNLLRIAVTGCQKLVSLPSPWFR-GSLIEVKKPWS 65
           P   I+S L R+ ++GC KL +LP    +  SL E++  W+
Sbjct: 834 PRMQILSRLRRLELSGCPKLKALPQQLAQINSLKEIELRWA 874


>12_02_0302 + 17079987-17080778
          Length = 263

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
 Frame = +2

Query: 209 DRPSAA---RVTL*KVPSPDTTADC-IVMFVFRRQPPLVISSSFPVDASA 346
           D+P AA   R+ + ++ S DT +D   +  + RR+P  V+++SFP   +A
Sbjct: 33  DQPQAAAYIRLVIEQLLSRDTASDTGRIRLLLRRRPRGVVAASFPAAVTA 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,806,070
Number of Sequences: 37544
Number of extensions: 399714
Number of successful extensions: 976
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)