Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12c02
         (680 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC037951-1|AAH37951.1|  400|Homo sapiens GDNF family receptor al...    30   6.6  
AY359037-1|AAQ89396.1|  369|Homo sapiens GFRA3 protein.                30   6.6  
AY358997-1|AAQ89356.1|  400|Homo sapiens GFRA3 protein.                30   6.6  
AF051767-1|AAC24355.1|  400|Homo sapiens GDNF family receptor al...    30   6.6  

>BC037951-1|AAH37951.1|  400|Homo sapiens GDNF family receptor alpha
           3 protein.
          Length = 400

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +1

Query: 229 CNALKGTVSGYHRRLHCDVCISPSTTA--SDKQLVPCGCVGMALSC*ASF*IGCYCH 393
           C A     + YH   H D C S  +T   S++  VP  C+  A     S  IGC CH
Sbjct: 51  CQADPTCSAAYH---HLDSCTSSISTPLPSEEPSVPADCLEAAQQLRNSSLIGCMCH 104


>AY359037-1|AAQ89396.1|  369|Homo sapiens GFRA3 protein.
          Length = 369

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +1

Query: 229 CNALKGTVSGYHRRLHCDVCISPSTTA--SDKQLVPCGCVGMALSC*ASF*IGCYCH 393
           C A     + YH   H D C S  +T   S++  VP  C+  A     S  IGC CH
Sbjct: 51  CQADPTCSAAYH---HLDSCTSSISTPLPSEEPSVPADCLEAAQQLRNSSLIGCMCH 104


>AY358997-1|AAQ89356.1|  400|Homo sapiens GFRA3 protein.
          Length = 400

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +1

Query: 229 CNALKGTVSGYHRRLHCDVCISPSTTA--SDKQLVPCGCVGMALSC*ASF*IGCYCH 393
           C A     + YH   H D C S  +T   S++  VP  C+  A     S  IGC CH
Sbjct: 51  CQADPTCSAAYH---HLDSCTSSISTPLPSEEPSVPADCLEAAQQLRNSSLIGCMCH 104


>AF051767-1|AAC24355.1|  400|Homo sapiens GDNF family receptor alpha
           3 protein.
          Length = 400

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +1

Query: 229 CNALKGTVSGYHRRLHCDVCISPSTTA--SDKQLVPCGCVGMALSC*ASF*IGCYCH 393
           C A     + YH   H D C S  +T   S++  VP  C+  A     S  IGC CH
Sbjct: 51  CQADPTCSAAYH---HLDSCTSSISTPLPSEEPSVPADCLEAAQQLRNSSLIGCMCH 104


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,359,482
Number of Sequences: 237096
Number of extensions: 2129499
Number of successful extensions: 4201
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4201
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)