Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12c02
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83116-10|CAB05564.2|  311|Caenorhabditis elegans Hypothetical p...    28   5.4  
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    28   7.1  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    28   7.1  
AC006672-8|AAY43997.1|  125|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z83116-10|CAB05564.2|  311|Caenorhabditis elegans Hypothetical
           protein M01B2.9 protein.
          Length = 311

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +1

Query: 511 LGFFYDVFPPFWKSFVNLYKVCIRSEKIYIYLRYLKTGLNINL 639
           LG  YD+F      F+NL+ + I    +Y+YL+  K GLN ++
Sbjct: 159 LGHAYDLFA-LTSFFINLFVLPIY---VYVYLKIKKMGLNSSM 197


>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
            repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 94   SHETMAKEVTPVFDSQ*QLFSINLTLCNIGEPLAVFVN 207
            S  T  KE+ P +    +L+S++L  C++ EPL   VN
Sbjct: 915  SGNTAIKELPPDYGMLSRLWSLSLKGCSLKEPLESMVN 952


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
            kinase protein.
          Length = 2393

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 94   SHETMAKEVTPVFDSQ*QLFSINLTLCNIGEPLAVFVN 207
            S  T  KE+ P +    +L+S++L  C++ EPL   VN
Sbjct: 913  SGNTAIKELPPDYGMLSRLWSLSLKGCSLKEPLESMVN 950


>AC006672-8|AAY43997.1|  125|Caenorhabditis elegans Hypothetical
           protein K08D12.7 protein.
          Length = 125

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = -3

Query: 402 SRTMAITTYLEGCLTA*G-----HADASTGNELLITSGG*RRNTNITMQSA 265
           S  + +T  L GC+TA G      AD S G+E +  +GG  R  ++ ++ A
Sbjct: 7   SNRLILTLLLVGCVTAAGLTRKRRADNSYGDEAVTPAGGGARVASMAVEEA 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,106,992
Number of Sequences: 27780
Number of extensions: 345500
Number of successful extensions: 694
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)