Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12c02
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   8.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   8.2  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   8.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   8.2  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   8.2  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 124 VSLPSPWFRGSLIEVKK 74
           VS   PWF+G  +E K+
Sbjct: 131 VSSKMPWFKGWTVERKE 147


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 413 LQLHGKNWQRGTYMCE 460
           LQL G  W+ G  +C+
Sbjct: 97  LQLTGGTWELGPMLCD 112


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 124 VSLPSPWFRGSLIEVKK 74
           VS   PWF+G  +E K+
Sbjct: 147 VSSKMPWFKGWTVERKE 163


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 124 VSLPSPWFRGSLIEVKK 74
           VS   PWF+G  +E K+
Sbjct: 204 VSSKMPWFKGWTVERKE 220


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 485 YYSHGAL*THTYRYH 441
           Y S  +L TH Y YH
Sbjct: 45  YCSRNSLMTHIYTYH 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,702
Number of Sequences: 438
Number of extensions: 4456
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)