Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt12b21
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 61 1e-10
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb... 56 3e-09
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 52 4e-08
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po... 52 4e-08
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 50 2e-07
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 48 6e-07
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb... 44 1e-05
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 43 2e-05
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar... 42 4e-05
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 39 5e-04
SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase |S... 39 5e-04
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 34 0.011
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ... 28 0.95
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 28 0.95
SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr ... 27 1.3
SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr ... 27 1.3
SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr 1... 27 1.3
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces... 26 3.8
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg... 26 3.8
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc... 26 3.8
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 26 3.8
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 25 5.1
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 25 5.1
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 25 6.7
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p... 25 6.7
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 25 8.9
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy... 25 8.9
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 8.9
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 60.9 bits (141), Expect = 1e-10
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Frame = +3
Query: 171 STLSITADLTKESDIEKIIKKTIDHYGKLDVLVNNAGIIETGTIENTSLAQYDRLMNTNV 350
+ L++ AD++K IE I+K I G +DVL+NNAG+ + E S +D ++ +
Sbjct: 46 AALALQADVSKADQIETAIEKVIQTLGPIDVLINNAGLADDTPFEQLSHESWDHDVSLVL 105
Query: 351 RSIYYLTMLAVPHLL-ESKGXXXXXXXXXGIRSFPGVLAYNISKASVDQFTRCVAL 515
R Y +PH+ + KG + G AY+ +KA ++ T+ +A+
Sbjct: 106 RGNYLTQRYVIPHMAKQGKGGSIVNIGSVNGHIYLGSPAYSAAKAGLENLTKALAV 161
>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 247
Score = 56.0 bits (129), Expect = 3e-09
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Frame = +3
Query: 171 STLSITADLTK--ESDIEKIIKKTIDHYGKLDVLVNNAGIIET-GTIENTSLAQYDRLMN 341
S + + D+T+ ++ IE IKK +GKLD ++ NAG++E I + + ++ +L +
Sbjct: 53 SFVHVKGDVTEVGKASIETAIKK----FGKLDSVILNAGVLEPIAKIADADINEWRKLFD 108
Query: 342 TNVRSIYYLTMLAVPHLLESKGXXXXXXXXXGIRSFPGVLAYNISKASVD 491
N S+ A+PHL ++KG +R FP AY SKA+++
Sbjct: 109 INFFSVVETVKYAIPHLRKTKGTIVIVSSGAAVRVFPAWAAYCCSKAAIN 158
>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 236
Score = 52.4 bits (120), Expect = 4e-08
Identities = 25/70 (35%), Positives = 40/70 (57%)
Frame = +3
Query: 141 KVSKDCDKFASTLSITADLTKESDIEKIIKKTIDHYGKLDVLVNNAGIIETGTIENTSLA 320
K +K + + L D+ S I+K ++K I H+G++DVL+NNAG +E+T+
Sbjct: 5 KNAKVLSRLENVLVTQLDVNNFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLESTTEE 64
Query: 321 QYDRLMNTNV 350
Q + NTNV
Sbjct: 65 QIHNIFNTNV 74
>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 236
Score = 52.4 bits (120), Expect = 4e-08
Identities = 25/70 (35%), Positives = 40/70 (57%)
Frame = +3
Query: 141 KVSKDCDKFASTLSITADLTKESDIEKIIKKTIDHYGKLDVLVNNAGIIETGTIENTSLA 320
K +K + + L D+ S I+K ++K I H+G++DVL+NNAG +E+T+
Sbjct: 5 KNAKVLSRLENVLVTQLDVNNFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLESTTEE 64
Query: 321 QYDRLMNTNV 350
Q + NTNV
Sbjct: 65 QIHNIFNTNV 74
>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 292
Score = 50.0 bits (114), Expect = 2e-07
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Frame = +3
Query: 177 LSITADLTKESDIEKIIKKTIDHYGKLDVLVNNAGIIETGTIENTSLAQYDRLMNTNVRS 356
L + D+T +E K +G +D+++NNAG G E+ ++ + R MN N
Sbjct: 50 LKLKLDVTDVKSVETAFKDAKRRFGNVDIVINNAGYGLVGEFESYNIEEMHRQMNVNFWG 109
Query: 357 IYYLTMLAVPHLLES--KGXXXXXXXXXGIRSFPGVLAYNISKASVDQFTRCV 509
+ Y+T A+ + ES G G P + YN SK +V+ ++ +
Sbjct: 110 VAYITKEALNLMRESGKGGRILQISSVAGYYPSPCLSMYNASKFAVEGLSQTI 162
>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 48.4 bits (110), Expect = 6e-07
Identities = 33/137 (24%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
Frame = +3
Query: 102 QLSLTGRNVENLQKVSKDCD-KF-ASTLSITADLTKESDIEKIIKKTIDHYGKLDVLVNN 275
+L L R +++++K+ + K+ S L + D++ I +I+ + +DVL+NN
Sbjct: 33 KLILAARRFSTVEEIAKELESKYEVSVLPLKLDVSDLKSIPGVIESLPKEFADIDVLINN 92
Query: 276 AGI-IETGTIENTSLAQYDRLMNTNVRSIYYLTMLAVP-HLLESKGXXXXXXXXXGIRSF 449
AG+ + T + + ++ ++ TNV + +T +P ++KG G S+
Sbjct: 93 AGLALGTDKVIDLNIDDAVTMITTNVLGMMAMTRAVLPIFYSKNKGDILNVGSIAGRESY 152
Query: 450 PGVLAYNISKASVDQFT 500
G Y +K+++ QFT
Sbjct: 153 VGGSVYCSTKSALAQFT 169
>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 339
Score = 44.4 bits (100), Expect = 1e-05
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Frame = +3
Query: 84 LSKLGAQLSLTGRNVENLQKVSK---DCDKFASTLSITADLTKESDIEKIIKKTIDHYGK 254
L++ GA++ L GRN E QKV K D + + + DL + + + I K
Sbjct: 62 LARKGAKVYLAGRNEEKYQKVMKQIHDEVRHSKIRFLRLDLLDFESVYQAAESFIAKEEK 121
Query: 255 LDVLVNNAGIIETGTIENTSLAQYDRLMNTNVRSIYYLTMLAVPHL 392
L +LVNNAGI+ E T Y+ + TN S Y T L +P L
Sbjct: 122 LHILVNNAGIMNP-PFELTK-DGYELQIQTNYLSHYLFTELLLPTL 165
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 43.2 bits (97), Expect = 2e-05
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Frame = +3
Query: 195 LTKESDIEKIIKKTIDHYGKLDVLVNNAGIIETG-TIENTSLAQYDRLMNTNVRSIYYLT 371
L K + ++ + G +DVLVNN + +IE+ Q+D TN+ S +++T
Sbjct: 102 LDKSDNCRDLVDFALKKLGWIDVLVNNIAYQQVAQSIEDIDDEQWDLTFKTNIFSFFWVT 161
Query: 372 MLAVPHLLESKGXXXXXXXXXGIRSFPGVLAYNISKASVDQFTR 503
A+ H ++S P +L Y +K ++ FTR
Sbjct: 162 KAAISH-MKSGSSIVNCSSINAYVGRPDLLDYTSTKGAITAFTR 204
>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 42.3 bits (95), Expect = 4e-05
Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 5/147 (3%)
Frame = +3
Query: 87 SKLGAQLSLTGRNVENLQKVSKDCDKFASTLSITADLTKESDIEKIIKKTIDHYGKLDVL 266
S+ G Q + GRN +L++ + +SD++ + K+I ++D +
Sbjct: 22 SQKGHQCHIVGRNEFHLKETLQSLSVAKGQQHTLTIADVQSDMKNL--KSIFESVEIDTV 79
Query: 267 VNNAGIIETGTIENTSLAQYDRLMNTNVRSIYYLTMLAVPHLLESKG-----XXXXXXXX 431
V+ AG++++ TS + D ++ TN+ S L+ +A+ +K
Sbjct: 80 VHAAGVLQSSLCVRTSEKEIDSIICTNLVSAIKLSKMAILEWFRNKNSERDRLILNISSR 139
Query: 432 XGIRSFPGVLAYNISKASVDQFTRCVA 512
+ PG Y SKA ++ FT+ +A
Sbjct: 140 LSTYALPGTSVYAASKAGLESFTKVLA 166
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 38.7 bits (86), Expect = 5e-04
Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 6/141 (4%)
Frame = +3
Query: 111 LTGRNVENLQKVSKDCDKFA-STLSITADLTKESDIEKIIKKTIDHYG-KLDVLVNNAGI 284
L GRN + L+ ++ DK + + + S + + + ++ G +LDV++ NAGI
Sbjct: 39 LYGRNKKALEYAAELRDKHGVQAKAYSCPIENRSAVIETTNQAVEELGGRLDVMIANAGI 98
Query: 285 -IETGTIENTSLAQYDRLMNTNVRSIYYLTMLAVPHL-LESKGXXXXXXXXXG-IRSFPG 455
I ++E+ + + +++ N+ YY A H + KG G I ++P
Sbjct: 99 AIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLIFTASMSGHIANWPQ 158
Query: 456 VLA-YNISKASVDQFTRCVAL 515
A Y+ +KA+V R +A+
Sbjct: 159 QWASYHATKAAVKHLARALAV 179
>SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 38.7 bits (86), Expect = 5e-04
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 1/132 (0%)
Frame = +3
Query: 96 GAQLSLTGRNVENLQKVSKDCDKFASTLSITADLTKESDIEKIIKKTIDHY-GKLDVLVN 272
G Q+ T R VE + ++K A ++ D+T E + ++ ++ G L L+N
Sbjct: 29 GFQVLATARQVERMDNLTK-----AGLQTLKLDVTDEDSVREVEQEVRKFTNGSLHYLIN 83
Query: 273 NAGIIETGTIENTSLAQYDRLMNTNVRSIYYLTMLAVPHLLESKGXXXXXXXXXGIRSFP 452
NAG + + + ++M+ N + + L+ +KG F
Sbjct: 84 NAGAPCSAPAIDLDIEDVSKVMDVNFYGVIRMNKAFQHQLIRAKGTIVNVNSLVSYVPFA 143
Query: 453 GVLAYNISKASV 488
AYN SKA++
Sbjct: 144 FNAAYNASKAAL 155
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 34.3 bits (75), Expect = 0.011
Identities = 19/84 (22%), Positives = 46/84 (54%)
Frame = +3
Query: 111 LTGRNVENLQKVSKDCDKFASTLSITADLTKESDIEKIIKKTIDHYGKLDVLVNNAGIIE 290
LT E +K++++ TL I D+++ +E +++ + ++ V+V NAG+
Sbjct: 53 LTTDPTEKAKKLAEETGVQVHTLKI--DISRSDTVEAGVEEIQKIFKEIHVVVANAGMPF 110
Query: 291 TGTIENTSLAQYDRLMNTNVRSIY 362
++ ++ +++++MN N S+Y
Sbjct: 111 RRSVLDSPPHEFEKVMNINTNSVY 134
>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 261
Score = 27.9 bits (59), Expect = 0.95
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Frame = +3
Query: 174 TLSITADLTKESDIEKIIKKTIDHYGKLDVLVNNAGIIETGTIENTSLAQYDRLMNTNVR 353
T + D+T ++E + + +D++V N GI + + + ++ +N N+
Sbjct: 72 TYTCKCDVTIPKEVEHAFAEIQKVFDTIDIVVPNNGICTGKSAIDMTYEEFANEINVNLL 131
Query: 354 SIYYLTMLAVPHLL-ESKGXXXXXXXXXGIR-SFPGV-LAYNISKASVDQFTRCVAL 515
++ + A P + G G+ + P AYN SKA V Q + +A+
Sbjct: 132 GVFNVAHNAGPIFQKQGHGSLVATASMSGVVVNVPQQQCAYNTSKAGVIQLIKSLAV 188
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 27.9 bits (59), Expect = 0.95
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 159 DKFASTLSITADLTKESDIEKIIKKTIDHYGKL 257
D A S+T K D +K I + ID YGKL
Sbjct: 290 DDIAQITSVTPITEKIEDKDKYISEVIDTYGKL 322
>SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 145
Score = 27.5 bits (58), Expect = 1.3
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 17 FCRQSRYRNRCQLRNWSGHRRILIKIRRSTI 109
F R N+ + R W GH+R + ++R+ +
Sbjct: 110 FLRAFSETNKSRYRRWQGHKRYSLALKRNNV 140
>SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 145
Score = 27.5 bits (58), Expect = 1.3
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 17 FCRQSRYRNRCQLRNWSGHRRILIKIRRSTI 109
F R N+ + R W GH+R + ++R+ +
Sbjct: 110 FLRAFSETNKSRYRRWQGHKRYSLALKRNNV 140
>SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 145
Score = 27.5 bits (58), Expect = 1.3
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 17 FCRQSRYRNRCQLRNWSGHRRILIKIRRSTI 109
F R N+ + R W GH+R + ++R+ +
Sbjct: 110 FLRAFSETNKSRYRRWQGHKRYSLALKRNNV 140
>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 118
Score = 25.8 bits (54), Expect = 3.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 102 QLSLTGRNVENLQKVSKD 155
+++LT RNV NL+KV D
Sbjct: 21 RITLTSRNVRNLEKVCSD 38
>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
diacylglycerol ethanolaminesphotranferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 386
Score = 25.8 bits (54), Expect = 3.8
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -3
Query: 340 FIRRSYWAKEVFSMVPVSIIPALFT 266
+I + YW ++ ++P+S+ P L T
Sbjct: 27 YILKPYWWNQLLKVIPMSMAPNLIT 51
>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -1
Query: 165 ICRSPYSLFASSPRFFPS 112
I RSP+ L S RFFPS
Sbjct: 3 ILRSPFRLIRSPARFFPS 20
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Frame = -3
Query: 298 VPVSIIPALFTKTSNFP*WSMV------FLMIFSISLSLVKSAVIDSV 173
VP F TSN P WS++ F++++++ LS++K +++V
Sbjct: 2160 VPYGQAWRFFWNTSNTPLWSIIILLLIFFIVVWAVLLSVIKILSLNNV 2207
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 242 PLRKVGRFSE*CRYY*NWNHREHLLGP 322
P+RK G F E +Y W R H P
Sbjct: 54 PIRKAGVFVETGAWYDGWETRRHNTAP 80
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -1
Query: 147 SLFASSPRFFPSKI 106
SLF S PRFFPS++
Sbjct: 371 SLFLSLPRFFPSEL 384
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 342 TNVRSIYYLTMLAVPHLL 395
TN + I Y+T+LAVP L+
Sbjct: 434 TNAQVINYITILAVPQLI 451
>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 509
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 277 PVLLKLEPSRTPPWPSMIVL 336
PVLL P TPP PS+ L
Sbjct: 169 PVLLTQRPCETPPTPSIEAL 188
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 455 SRERANPINTRYVYNIPFAFEEMRDRQH 372
SR P+N RY + F F + R+H
Sbjct: 868 SRHAVIPVNNRYRSAVVFEFRKQLQRKH 895
>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 256
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 147 SKDCDKFASTLSITADLTKESDIEKIIKKTIDHY 248
+K KF+ST+ T +LTK D K + T H+
Sbjct: 181 TKSNAKFSSTIFSTPELTKLVDFCKNHESTTGHF 214
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 24.6 bits (51), Expect = 8.9
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +3
Query: 180 SITADLTKESDIEKIIKKTIDHYGKLDVLVNNAGIIETGTIENTSLAQYDRLMNTNVRSI 359
SIT TK + ++ K + +G+L V ++ +I + YD L+ V S
Sbjct: 638 SITEKETK-GILRRLTKTNVKQFGRLLAKVCHSNPCTVFSIALNQIETYDNLVEVVVDSA 696
Query: 360 YYLTML 377
++T L
Sbjct: 697 RFITAL 702
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,076,000
Number of Sequences: 5004
Number of extensions: 42185
Number of successful extensions: 139
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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