Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12b19
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    29   0.53 
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    28   0.92 
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    25   8.6  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    25   8.6  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    25   8.6  

>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +2

Query: 128 NVKLWRLNSTSADSALKKGEEEEEFRVLDILKKRDK 235
           NV+LWR  ++S  ++++   EE   + LD L++R K
Sbjct: 339 NVRLWRARASSR-ASIRSTREENRLKYLDSLRERYK 373


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +2

Query: 86  LIKRSKSGCFNSA---CNVKLWRLNSTSADSALKKGEEEEE 199
           L+KR KSG +       N ++W     + +  + +GEEEEE
Sbjct: 165 LVKRLKSGVYGDQPLNVNEEIWNKVLAAREGLIDEGEEEEE 205


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 292 GHKPELGECVAWSENFPPVFGAITDTSGLR 381
           G+KP+L    A+ ENF   F A    S +R
Sbjct: 36  GYKPKLHRTYAFFENFASSFAACDCMSNIR 65


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +2

Query: 398 PPGKKANAELMKIPNFLHLTPPVIKSQCEALKQFCTE 508
           P GK+ +  L+  P+ L    PV+  +  A++ + ++
Sbjct: 353 PSGKRVSLSLVANPSHLEAEDPVVLGKVRAIQHYTSD 389


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +2

Query: 128 NVKLWRLNSTSADSALKKGEEEEEFRVLDILKKRDKMQRRV 250
           +V +W  N  +    + + +EEE  R+L   ++ D + ++V
Sbjct: 209 SVTIWFQNRRAKSKLISRRQEEERQRILREQRELDSLNQKV 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,483,130
Number of Sequences: 5004
Number of extensions: 51837
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)