Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt12b19
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0300 + 2427524-2427827,2429066-2429274,2429512-2430150 36 0.033
08_01_0279 - 2277487-2278161,2278513-2278662,2278749-2278843,227... 30 1.2
02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615... 29 2.9
11_04_0158 + 14207463-14207629,14207724-14207774,14207874-142080... 29 3.8
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 28 5.0
07_03_1435 - 26532302-26533159,26533559-26534902,26535180-26535188 28 5.0
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999... 28 5.0
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 28 5.0
07_01_0128 + 956953-957166,957657-958309 28 6.6
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 28 6.6
06_01_0008 + 141405-142421 28 6.6
06_01_0766 - 5729550-5731057,5731248-5731515 27 8.7
>08_01_0300 + 2427524-2427827,2429066-2429274,2429512-2430150
Length = 383
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 329 PKTFHPSSVPLPIRQGYVPKGQAPPGK-KANAELMKIPNFLHLTPPV 466
P + P+ VP+P GYVP APPG +A E++K P +H PPV
Sbjct: 280 PPYYPPAFVPMPY-YGYVPVFYAPPGAVQAQHEVVK-PVAVHSKPPV 324
>08_01_0279 -
2277487-2278161,2278513-2278662,2278749-2278843,
2279367-2279865
Length = 472
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 188 EEEEFRVLDILKKRDKMQRRVVKRTDVQPDRIDRMATNQNWGNVWPGPK 334
EE E RV ++++DK +++ D D +A +W + W G +
Sbjct: 112 EEWEARVRKNIEEQDKAYEEMMRSQDDDESNWDYIAYRNSWNDTWSGSR 160
>02_03_0212 -
16460665-16460766,16460971-16461298,16461379-16461502,
16461576-16461825,16462185-16462265,16463030-16463114,
16463200-16463321,16463865-16464672,16464775-16465027,
16465998-16466796
Length = 983
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 304 ELGECVAWSENFPPVFGAITDTSGLRTKGS 393
E GEC+AW + PVF T G GS
Sbjct: 244 EAGECIAWEAHRGPVFALTTSLYGDLWSGS 273
>11_04_0158 +
14207463-14207629,14207724-14207774,14207874-14208002,
14209342-14209447,14209491-14209601,14210042-14210098,
14210903-14211727
Length = 481
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2
Query: 323 PGPKTFHPSSVPLP 364
PGP FHPSS P+P
Sbjct: 283 PGPAAFHPSSRPMP 296
>10_08_0829 -
20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/55 (23%), Positives = 31/55 (56%)
Frame = +2
Query: 74 KMSILIKRSKSGCFNSACNVKLWRLNSTSADSALKKGEEEEEFRVLDILKKRDKM 238
+++ +K ++ C + + +R S+ + L+K +EE + R+L++ RDK+
Sbjct: 590 RLTSKVKYLETKCADLELKLISFRSESSELEEKLQKSQEELKDRILELSDLRDKL 644
>07_03_1435 - 26532302-26533159,26533559-26534902,26535180-26535188
Length = 736
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 352 RRRVESFRTRPHIPPVLVCGHPVDPIWLHISS 257
++ E F+ PPVL HP +P+ L++S+
Sbjct: 130 QKAFEDFKKLLTTPPVLASPHPQEPLLLYVSA 161
>01_06_0116 -
26595570-26596607,26596964-26598353,26599386-26599923,
26600562-26601453
Length = 1285
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/63 (23%), Positives = 26/63 (41%)
Frame = +2
Query: 290 MATNQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPPVI 469
M++ + G+ W P ++ P P+ G+VP PG P +L P +
Sbjct: 677 MSSGRGHGHAWNNPPSW-----PSPVANGFVPMQHGVPGFHPPVHQFSAPPMFNLRPQMK 731
Query: 470 KSQ 478
+Q
Sbjct: 732 LNQ 734
>01_01_0128 -
1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/41 (29%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Frame = +2
Query: 167 SALKKGEEEEEFRVL-DI-LKKRDKMQRRVVKRTDVQPDRI 283
S LKK E+E R+L D+ L+++++++R++V++ ++ + +
Sbjct: 636 SVLKKSAEDERIRLLNDVKLREQERIRRQLVEKEKIEAEEL 676
>07_01_0128 + 956953-957166,957657-958309
Length = 288
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +3
Query: 273 QIGSTGWPQTRTGGMCGLVRKLSTRLRCHYRYVR 374
++ + GWP T +C + + ++ L H RY R
Sbjct: 200 RLAARGWPNNGTCPLCRVTSESASHLLVHCRYTR 233
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 314 NVWPGPKTFHPSSVPLPIRQGYVPKGQAPP 403
+VW P T PS VP+ + VP+G APP
Sbjct: 292 HVWGHP-TMDPSRVPVWPPRHLVPRGPAPP 320
>06_01_0008 + 141405-142421
Length = 338
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = -3
Query: 389 PLVRSPDVSVMAPKTGGKFSDQATHSPSSGLWPSCRSYLAAHQFF*LLDAAF 234
P SPD V+ P GG F ++ + P+ +L H FF +F
Sbjct: 23 PPPTSPDADVLCPFCGGGFVEELGEDINPNPNPNPSPFLPHHPFFPFASPSF 74
>06_01_0766 - 5729550-5731057,5731248-5731515
Length = 591
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +2
Query: 218 LKKRDKMQRRVVKRTDVQPDRIDRMATNQNWGNVWPGPK 334
L++ +++QRR T D ++R+ + ++ G V P P+
Sbjct: 146 LRRHEELQRRCGPGTAAYSDAVERLRSGKSGGIVSPSPE 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,843,123
Number of Sequences: 37544
Number of extensions: 339946
Number of successful extensions: 995
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -