Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12b19
         (607 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC109372-1|AAI09373.1|  323|Homo sapiens mitochondrial ribosomal...   144   2e-34
BC063515-1|AAH63515.1|  321|Homo sapiens MRPS35 protein protein.      144   2e-34
BC028346-1|AAH28346.2|  319|Homo sapiens MRPS35 protein protein.      144   2e-34
BC015862-1|AAH15862.2|  323|Homo sapiens mitochondrial ribosomal...   144   2e-34
AK075515-1|BAC11664.1|  323|Homo sapiens protein ( Homo sapiens ...   144   2e-34
AK075378-1|BAC11579.1|  194|Homo sapiens protein ( Homo sapiens ...   144   2e-34
AF182422-1|AAG14958.1|  227|Homo sapiens MDS023 protein.              100   5e-21
Z85987-1|CAI42222.1|  961|Homo sapiens FYVE, RhoGEF and PH domai...    36   0.15 
U11690-1|AAA57004.1|  961|Homo sapiens FGD1 protein.                   36   0.15 
BC034530-1|AAH34530.1|  961|Homo sapiens FYVE, RhoGEF and PH dom...    36   0.15 
BC054003-1|AAH54003.1| 1192|Homo sapiens RNASEN protein protein.       31   4.2  
AF189011-1|AAF80558.1| 1374|Homo sapiens ribonuclease III protein.     31   4.2  
AB011088-1|BAA25442.3| 1382|Homo sapiens KIAA0516 protein protein.     30   7.3  
AL162393-4|CAI15243.1|  954|Homo sapiens zinc finger protein 618...    29   9.6  
AL162393-3|CAI15242.1|  375|Homo sapiens zinc finger protein 618...    29   9.6  
AL137850-3|CAI15898.1|  954|Homo sapiens zinc finger protein 618...    29   9.6  
AL137850-2|CAI15897.1|  375|Homo sapiens zinc finger protein 618...    29   9.6  
AB075832-1|BAB85538.1|  735|Homo sapiens KIAA1952 protein protein.     29   9.6  

>BC109372-1|AAI09373.1|  323|Homo sapiens mitochondrial ribosomal
           protein S35 protein.
          Length = 323

 Score =  144 bits (349), Expect = 2e-34
 Identities = 63/117 (53%), Positives = 80/117 (68%)
 Frame = +2

Query: 257 RTDVQPDRIDRMATNQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKI 436
           R    P R ++MA +Q+W +V+P    F PS+VPLP+R GY  K   P  K+ N EL+KI
Sbjct: 49  RRKALPPRTEKMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKI 108

Query: 437 PNFLHLTPPVIKSQCEALKQFCTEWPNLLNSEESIEKHYPLXIISSDYCHASPSIRN 607
           PNFLHLTP  IK  CEALK FCTEWP  L+S+E  EKH+P+ I S+DY  + PS+RN
Sbjct: 109 PNFLHLTPVAIKKHCEALKDFCTEWPAALDSDEKCEKHFPIEIDSTDYVSSGPSVRN 165


>BC063515-1|AAH63515.1|  321|Homo sapiens MRPS35 protein protein.
          Length = 321

 Score =  144 bits (349), Expect = 2e-34
 Identities = 63/117 (53%), Positives = 80/117 (68%)
 Frame = +2

Query: 257 RTDVQPDRIDRMATNQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKI 436
           R    P R ++MA +Q+W +V+P    F PS+VPLP+R GY  K   P  K+ N EL+KI
Sbjct: 47  RRKALPPRTEKMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKI 106

Query: 437 PNFLHLTPPVIKSQCEALKQFCTEWPNLLNSEESIEKHYPLXIISSDYCHASPSIRN 607
           PNFLHLTP  IK  CEALK FCTEWP  L+S+E  EKH+P+ I S+DY  + PS+RN
Sbjct: 107 PNFLHLTPVAIKKHCEALKDFCTEWPAALDSDEKCEKHFPIEIDSTDYVSSGPSVRN 163


>BC028346-1|AAH28346.2|  319|Homo sapiens MRPS35 protein protein.
          Length = 319

 Score =  144 bits (349), Expect = 2e-34
 Identities = 63/117 (53%), Positives = 80/117 (68%)
 Frame = +2

Query: 257 RTDVQPDRIDRMATNQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKI 436
           R    P R ++MA +Q+W +V+P    F PS+VPLP+R GY  K   P  K+ N EL+KI
Sbjct: 45  RRKALPPRTEKMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKI 104

Query: 437 PNFLHLTPPVIKSQCEALKQFCTEWPNLLNSEESIEKHYPLXIISSDYCHASPSIRN 607
           PNFLHLTP  IK  CEALK FCTEWP  L+S+E  EKH+P+ I S+DY  + PS+RN
Sbjct: 105 PNFLHLTPVAIKKHCEALKDFCTEWPAALDSDEKCEKHFPIEIDSTDYVSSGPSVRN 161


>BC015862-1|AAH15862.2|  323|Homo sapiens mitochondrial ribosomal
           protein S35 protein.
          Length = 323

 Score =  144 bits (349), Expect = 2e-34
 Identities = 63/117 (53%), Positives = 80/117 (68%)
 Frame = +2

Query: 257 RTDVQPDRIDRMATNQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKI 436
           R    P R ++MA +Q+W +V+P    F PS+VPLP+R GY  K   P  K+ N EL+KI
Sbjct: 49  RRKALPPRTEKMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKI 108

Query: 437 PNFLHLTPPVIKSQCEALKQFCTEWPNLLNSEESIEKHYPLXIISSDYCHASPSIRN 607
           PNFLHLTP  IK  CEALK FCTEWP  L+S+E  EKH+P+ I S+DY  + PS+RN
Sbjct: 109 PNFLHLTPVAIKKHCEALKDFCTEWPAALDSDEKCEKHFPIEIDSTDYVSSGPSVRN 165


>AK075515-1|BAC11664.1|  323|Homo sapiens protein ( Homo sapiens
           cDNA PSEC0213 fis, clone HEMBA1004078, highly similar to
           Mitochondrial ribosomal protein S35. ).
          Length = 323

 Score =  144 bits (349), Expect = 2e-34
 Identities = 63/117 (53%), Positives = 80/117 (68%)
 Frame = +2

Query: 257 RTDVQPDRIDRMATNQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKI 436
           R    P R ++MA +Q+W +V+P    F PS+VPLP+R GY  K   P  K+ N EL+KI
Sbjct: 49  RRKALPPRTEKMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKI 108

Query: 437 PNFLHLTPPVIKSQCEALKQFCTEWPNLLNSEESIEKHYPLXIISSDYCHASPSIRN 607
           PNFLHLTP  IK  CEALK FCTEWP  L+S+E  EKH+P+ I S+DY  + PS+RN
Sbjct: 109 PNFLHLTPVAIKKHCEALKDFCTEWPAALDSDEKCEKHFPIEIDSTDYVSSGPSVRN 165


>AK075378-1|BAC11579.1|  194|Homo sapiens protein ( Homo sapiens
           cDNA PSEC0068 fis, clone NT2RP2001270. ).
          Length = 194

 Score =  144 bits (349), Expect = 2e-34
 Identities = 63/117 (53%), Positives = 80/117 (68%)
 Frame = +2

Query: 257 RTDVQPDRIDRMATNQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKI 436
           R    P R ++MA +Q+W +V+P    F PS+VPLP+R GY  K   P  K+ N EL+KI
Sbjct: 49  RRKALPPRTEKMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKI 108

Query: 437 PNFLHLTPPVIKSQCEALKQFCTEWPNLLNSEESIEKHYPLXIISSDYCHASPSIRN 607
           PNFLHLTP  IK  CEALK FCTEWP  L+S+E  EKH+P+ I S+DY  + PS+RN
Sbjct: 109 PNFLHLTPVAIKKHCEALKDFCTEWPAALDSDEKCEKHFPIEIDSTDYVSSGPSVRN 165


>AF182422-1|AAG14958.1|  227|Homo sapiens MDS023 protein.
          Length = 227

 Score =  100 bits (239), Expect = 5e-21
 Identities = 42/67 (62%), Positives = 51/67 (76%)
 Frame = +2

Query: 407 KKANAELMKIPNFLHLTPPVIKSQCEALKQFCTEWPNLLNSEESIEKHYPLXIISSDYCH 586
           K+ N EL+KIPNFLHLTP  IK  CEALK FCTEWP  L+S+E  EKH+P+ I S+DY  
Sbjct: 3   KEGNLELLKIPNFLHLTPVAIKKHCEALKDFCTEWPAALDSDEKCEKHFPIEIDSTDYVS 62

Query: 587 ASPSIRN 607
           + PS+RN
Sbjct: 63  SGPSVRN 69


>Z85987-1|CAI42222.1|  961|Homo sapiens FYVE, RhoGEF and PH domain
           containing 1 (faciogenital dysplasia) protein.
          Length = 961

 Score = 35.5 bits (78), Expect = 0.15
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +2

Query: 323 PGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPP 463
           PGP T  PS  P P+++   PK Q PP K +  ++ ++P  L   PP
Sbjct: 137 PGPPTETPSQRPSPLKRAPGPKPQVPP-KPSYLQMPRMPPPLEPIPP 182


>U11690-1|AAA57004.1|  961|Homo sapiens FGD1 protein.
          Length = 961

 Score = 35.5 bits (78), Expect = 0.15
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +2

Query: 323 PGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPP 463
           PGP T  PS  P P+++   PK Q PP K +  ++ ++P  L   PP
Sbjct: 137 PGPPTETPSQRPSPLKRAPGPKPQVPP-KPSYLQMPRMPPPLEPIPP 182


>BC034530-1|AAH34530.1|  961|Homo sapiens FYVE, RhoGEF and PH domain
           containing 1 (faciogenital dysplasia) protein.
          Length = 961

 Score = 35.5 bits (78), Expect = 0.15
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +2

Query: 323 PGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPP 463
           PGP T  PS  P P+++   PK Q PP K +  ++ ++P  L   PP
Sbjct: 137 PGPPTETPSQRPSPLKRAPGPKPQVPP-KPSYLQMPRMPPPLEPIPP 182


>BC054003-1|AAH54003.1| 1192|Homo sapiens RNASEN protein protein.
          Length = 1192

 Score = 30.7 bits (66), Expect = 4.2
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +2

Query: 299 NQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPPVIKSQ 478
           N    + +P P  F P   P+P      P   APPG+     +M  P+  H  PP +  Q
Sbjct: 104 NHQMRHPFPVPPCFPPMPPPMPCPNN-PPVPGAPPGQGTFPFMMPPPSMPHPPPPPVMPQ 162


>AF189011-1|AAF80558.1| 1374|Homo sapiens ribonuclease III protein.
          Length = 1374

 Score = 30.7 bits (66), Expect = 4.2
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +2

Query: 299 NQNWGNVWPGPKTFHPSSVPLPIRQGYVPKGQAPPGKKANAELMKIPNFLHLTPPVIKSQ 478
           N    + +P P  F P   P+P      P   APPG+     +M  P+  H  PP +  Q
Sbjct: 104 NHQMRHPFPVPPCFPPMPPPMPCPNN-PPVPGAPPGQGTFPFMMPPPSMPHPPPPPVMPQ 162


>AB011088-1|BAA25442.3| 1382|Homo sapiens KIAA0516 protein protein.
          Length = 1382

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 344 PSSVPLPIRQGYVPKGQAPP 403
           P+ VP+P R G VP GQ PP
Sbjct: 27  PALVPVPARVGSVPCGQVPP 46


>AL162393-4|CAI15243.1|  954|Homo sapiens zinc finger protein 618
           protein.
          Length = 954

 Score = 29.5 bits (63), Expect = 9.6
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 326 GPKTFHPSSVPLPIRQGYVPKGQA-PPGKKANAELMKIPNFLHLTPPVIKSQ 478
           G +  HP   P P  +    K Q    GKKA A +++    LH TPP  ++Q
Sbjct: 296 GSECSHPEVSPSP--RFVAAKTQTNQSGKKAPASVVRCATLLHRTPPATQTQ 345


>AL162393-3|CAI15242.1|  375|Homo sapiens zinc finger protein 618
           protein.
          Length = 375

 Score = 29.5 bits (63), Expect = 9.6
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 326 GPKTFHPSSVPLPIRQGYVPKGQA-PPGKKANAELMKIPNFLHLTPPVIKSQ 478
           G +  HP   P P  +    K Q    GKKA A +++    LH TPP  ++Q
Sbjct: 284 GSECSHPEVSPSP--RFVAAKTQTNQSGKKAPASVVRCATLLHRTPPATQTQ 333


>AL137850-3|CAI15898.1|  954|Homo sapiens zinc finger protein 618
           protein.
          Length = 954

 Score = 29.5 bits (63), Expect = 9.6
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 326 GPKTFHPSSVPLPIRQGYVPKGQA-PPGKKANAELMKIPNFLHLTPPVIKSQ 478
           G +  HP   P P  +    K Q    GKKA A +++    LH TPP  ++Q
Sbjct: 296 GSECSHPEVSPSP--RFVAAKTQTNQSGKKAPASVVRCATLLHRTPPATQTQ 345


>AL137850-2|CAI15897.1|  375|Homo sapiens zinc finger protein 618
           protein.
          Length = 375

 Score = 29.5 bits (63), Expect = 9.6
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 326 GPKTFHPSSVPLPIRQGYVPKGQA-PPGKKANAELMKIPNFLHLTPPVIKSQ 478
           G +  HP   P P  +    K Q    GKKA A +++    LH TPP  ++Q
Sbjct: 284 GSECSHPEVSPSP--RFVAAKTQTNQSGKKAPASVVRCATLLHRTPPATQTQ 333


>AB075832-1|BAB85538.1|  735|Homo sapiens KIAA1952 protein protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 9.6
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 326 GPKTFHPSSVPLPIRQGYVPKGQA-PPGKKANAELMKIPNFLHLTPPVIKSQ 478
           G +  HP   P P  +    K Q    GKKA A +++    LH TPP  ++Q
Sbjct: 62  GSECSHPEVSPSP--RFVAAKTQTNQSGKKAPASVVRCATLLHRTPPATQTQ 111


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,752,060
Number of Sequences: 237096
Number of extensions: 1928595
Number of successful extensions: 4838
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4837
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6410414940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)