Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12b19
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-30|CAB61063.1|  365|Caenorhabditis elegans Hypothetical...   108   3e-24
U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.     31   0.64 
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr...    31   0.64 
U50307-2|AAA92303.1|  558|Caenorhabditis elegans Serine palmitoy...    29   2.6  
U50307-1|AAK71365.1|  586|Caenorhabditis elegans Serine palmitoy...    29   2.6  
AC199170-5|ABO33263.1|   95|Caenorhabditis elegans Hypothetical ...    29   3.4  
U52000-4|AAA96092.1|  107|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AC084159-15|AAK39353.1|  418|Caenorhabditis elegans Hypothetical...    27   7.9  

>AL132948-30|CAB61063.1|  365|Caenorhabditis elegans Hypothetical
           protein Y39B6A.39 protein.
          Length = 365

 Score =  108 bits (259), Expect = 3e-24
 Identities = 55/124 (44%), Positives = 77/124 (62%), Gaps = 4/124 (3%)
 Frame = +2

Query: 248 VVKRTDVQPDRIDRMATN-QNWGNVWPGPKTFHPSSVPLPIRQGYVP--KGQAPPGKKAN 418
           ++ R   +P R + M    Q W +VWP  +TF  S VPLP+R G  P  + +AP  K+ N
Sbjct: 84  LMDRLTKRPPRSEEMDPEAQKWCDVWPAARTFASSVVPLPVRMGTRPNVEKRAPFKKEGN 143

Query: 419 AELMKIPNFLHLTPPVIKSQCEALKQFCTEW-PNLLNSEESIEKHYPLXIISSDYCHASP 595
            EL+KIPNFLHLTPP I+  C+A+K+FCT + P LL++  +  +H P+ I  S Y H   
Sbjct: 144 LELVKIPNFLHLTPPAIQQHCQAIKKFCTPFPPELLSNPSATCQHLPISIEYSTYIHQGT 203

Query: 596 SIRN 607
           SIR+
Sbjct: 204 SIRD 207


>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
          Length = 1404

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
 Frame = +2

Query: 467 IKSQCEALKQFCTEWPNL--LNSEE---SIEKHYPLXIISSDYCHASPSIRN 607
           ++S C   + FC + PNL  +NS+    SI +HYPL ++     H+  + ++
Sbjct: 496 LRSICAPYRPFCGQCPNLQIVNSDHHFLSIPRHYPLYLVGLFDLHSGQTCQS 547


>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical
           protein F35H10.10 protein.
          Length = 1404

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
 Frame = +2

Query: 467 IKSQCEALKQFCTEWPNL--LNSEE---SIEKHYPLXIISSDYCHASPSIRN 607
           ++S C   + FC + PNL  +NS+    SI +HYPL ++     H+  + ++
Sbjct: 496 LRSICAPYRPFCGQCPNLQIVNSDHHFLSIPRHYPLYLVGLFDLHSGQTCQS 547


>U50307-2|AAA92303.1|  558|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 2, isoform a protein.
          Length = 558

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 218 LKKRDKMQRRVVKRTDVQPDRIDRMATNQNWGNVWPGPKT 337
           +K RD  +R +        D +DR++ + NW   +PG +T
Sbjct: 134 IKVRDVFERPICSVPGATVDLVDRVSHDGNWTYEYPGTRT 173


>U50307-1|AAK71365.1|  586|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 2, isoform b protein.
          Length = 586

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 218 LKKRDKMQRRVVKRTDVQPDRIDRMATNQNWGNVWPGPKT 337
           +K RD  +R +        D +DR++ + NW   +PG +T
Sbjct: 162 IKVRDVFERPICSVPGATVDLVDRVSHDGNWTYEYPGTRT 201


>AC199170-5|ABO33263.1|   95|Caenorhabditis elegans Hypothetical
           protein T08D2.4 protein.
          Length = 95

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 343 VESFRTRPHIPPVLVCGH 290
           +E F    HIP VL+CGH
Sbjct: 30  MEEFDANSHIPKVLICGH 47


>U52000-4|AAA96092.1|  107|Caenorhabditis elegans Hypothetical
           protein B0410.1 protein.
          Length = 107

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 118 IEAPRLRTFD*NAHFLYYLKCCKHLVTKRH 29
           I+ PR+R+FD    FL    CC H   K H
Sbjct: 46  IKCPRMRSFDVGLFFLIVSSCC-HFHYKMH 74


>AC084159-15|AAK39353.1|  418|Caenorhabditis elegans Hypothetical
           protein Y73B3A.13 protein.
          Length = 418

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 261 LMCSQIGSTGWPQTRTGGMCGLVRKLSTRLRCHYRYVRATYQRVKHRQVKK 413
           LM  +  +T   +TRTG   G   K+  R R H+  +   +Q ++  Q+++
Sbjct: 164 LMMIKTWTTTCSKTRTGEQFGANSKIIFRWRLHFNDLPRAFQPIRVAQIER 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,632,575
Number of Sequences: 27780
Number of extensions: 290931
Number of successful extensions: 862
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)