Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt12b17
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0985 - 12961787-12961984,12963177-12963337,12965332-129654... 30 1.5
02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451 29 2.6
05_06_0267 - 26784861-26784896,26785324-26785404,26785530-267857... 29 3.4
09_04_0107 - 14640097-14640348,14640472-14640701,14640805-146412... 29 4.5
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 29 4.5
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 28 5.9
11_06_0159 - 20780613-20781126,20781377-20781426 28 5.9
08_02_0758 + 20848078-20849579,20849660-20849850,20849944-208501... 28 5.9
01_01_0975 - 7686297-7686458,7687117-7687245,7687754-7687831,768... 28 5.9
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 28 7.8
05_07_0295 - 29051375-29052135,29053368-29053533 28 7.8
04_04_0763 - 27854600-27854668,27854766-27855140,27855227-278559... 28 7.8
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498... 28 7.8
>03_02_0985 -
12961787-12961984,12963177-12963337,12965332-12965489,
12966015-12966105,12966715-12966752,12966994-12967154,
12967249-12968687,12968815-12969227,12969630-12970987,
12971089-12971454,12971533-12971696,12971748-12971820,
12972967-12973113
Length = 1588
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +3
Query: 264 SAFNGKKINDYIWRSQLVFLDSHNVTRNSKANQNNQKALTQLQTEDSPGEA 416
SA GK+ N I S+++ D+H++T +S A K ++Q TE+S +A
Sbjct: 340 SAILGKEANVEIPGSRVILSDTHDITCSSGAPTTELKGVSQF-TEESTKDA 389
>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
Length = 112
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +3
Query: 342 RNSKANQNNQKALTQLQTEDSPGEAAWHSPKPEAHTSQESQSPSDMNYQ 488
+ SK+NQ +L Q++ ++ E AW+ K A+ + NY+
Sbjct: 22 KRSKSNQYENTSLVQIEGVNTKEEVAWYCGKRMAYVYKAKTKSGGTNYR 70
>05_06_0267 -
26784861-26784896,26785324-26785404,26785530-26785702,
26785780-26785938,26786199-26786328,26786447-26786609,
26787027-26787109,26787605-26787664,26787819-26787940,
26789126-26789275,26789354-26789546,26790156-26790393,
26791240-26791320,26791403-26791647
Length = 637
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +3
Query: 360 QNNQKALTQLQTEDSPGEAAWHSPKPEAHTSQESQSPSDMNYQNESRLTKRKAEDDVDKI 539
+N +++ TED P P ++ + S+ SD + ++ ++DD D
Sbjct: 78 RNPNRSVPPPPTEDIPAVPGSSGVLPLSNLQRHSEKLSDTHGSDKEDEVVDSSDDDCDPY 137
Query: 540 LNYLVN 557
NYLV+
Sbjct: 138 FNYLVD 143
>09_04_0107 -
14640097-14640348,14640472-14640701,14640805-14641215,
14641481-14643831,14643927-14644093
Length = 1136
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 363 NNQKALTQLQTEDSPGEAAWHSPKPEAHTSQESQSPSDMNYQ--NESRLTKRKAEDD 527
++ KA+ + S GE + H PE T+++ S +D Y+ ++R+ +AE+D
Sbjct: 653 DDHKAIVSATNDSSNGEVSDHKSTPE--TAEQEFSGNDDPYELVADARIISERAEED 707
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 28.7 bits (61), Expect = 4.5
Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 14/190 (7%)
Frame = +3
Query: 48 IYATMDVGRLIECVKDHVYLYDIKHKDYKNIALKTAVWEAIAKELHQTCDTVK---LKWK 218
+ AT+D E V+++ + ++++ + I W + KEL + D V+ L K
Sbjct: 856 LQATIDTIHATEEVQENARSIERRNQE-EYIKRLERDWAEVKKELQEQRDHVRVLTLDKK 914
Query: 219 TIRDGYIKYKKQVKDSAFNG-KKINDYIWRSQLVFLDSHNVTRNSKANQNNQKALTQLQ- 392
DG +K + ++ N K D R+ + ++ K+ + N + L QL+
Sbjct: 915 NAFDGCLKQVEDMRKELQNSWKAATDAESRAAVAEAKCSDLETKLKSRKENDE-LFQLKE 973
Query: 393 -----TEDSPGEAAWHSPKPEAHTSQES---QSPSDM-NYQNESRLTKRKAEDDVDKILN 545
E++ ++ E S ES Q S + +++ ES K+ ED++ K L
Sbjct: 974 ELEKYKEEAQANKSYMLQYKEIANSNESALKQMESALQDFKTESETIKKSLEDEITK-LR 1032
Query: 546 YLVNKKEKKY 575
+++ EK Y
Sbjct: 1033 TKISELEKCY 1042
>12_02_0800 + 23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = +3
Query: 324 DSHNVTRNSKANQNNQKALTQLQTEDSPGEAAWHSPKPEAHTSQESQS 467
+SH + +K + NQ+++ ++ A W KP H+ Q ++
Sbjct: 979 NSHPKRQQAKRSGKNQQSIQPIERPHGNEGAVWAPVKPSGHSEQSGEA 1026
>11_06_0159 - 20780613-20781126,20781377-20781426
Length = 187
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 87 RIRLSVPRPLWRRSRHARRVP 25
R+RL +P P W R R RR P
Sbjct: 131 RLRLLLPSPAWMRWRRRRRAP 151
>08_02_0758 +
20848078-20849579,20849660-20849850,20849944-20850179,
20850254-20850973
Length = 882
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 387 LQTEDSPGEAAWHSPKPEAHTSQESQSPSDMNYQNESRLTKR 512
LQT DSP ++++ S P+ TS+ SP D + S L+ R
Sbjct: 291 LQTHDSPSDSSYQSLSPDC-TSR--LSPKDQTFTASSHLSLR 329
>01_01_0975 -
7686297-7686458,7687117-7687245,7687754-7687831,
7688011-7688469,7690648-7690788,7691771-7692421
Length = 539
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 357 NQNNQKALTQLQTEDSPGEAAWH-SPKPEAHTSQESQSPSDMNYQNESRLTKRKAEDD 527
N + L+ + TEDS AA SP E H+ ++ S S ++ KRK + D
Sbjct: 162 NGGGDEVLSAVTTEDSSAGAAKSCSPSAEGHSKRKPSSSSSSAAAGKNSHGKRKVKVD 219
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 360 QNNQKALTQLQTEDSPGEAAWHSPKPEAHTSQESQSPSDMN 482
+N Q+ + Q D PG +A S + +H Q+ QSP+ ++
Sbjct: 1505 RNIQQRMVPQQQNDLPGASAVPSVQNGSHGQQQKQSPAALS 1545
>05_07_0295 - 29051375-29052135,29053368-29053533
Length = 308
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +3
Query: 393 TEDSPGEAA-WHSPKPEAHTSQESQSPSDMNYQNESRLTKRKAEDDVDKILNYLVNKKEK 569
+ D P +A W S H + + S D + + KRK E + ++L V ++
Sbjct: 211 SHDKPLQAGHWQSDATNGHANGYADSSVDDPELHYIGIEKRKGEVEKVEMLKREVCDLKE 270
Query: 570 KYDAVDYLFMSYAENVQDL 626
+ D+L SY E +L
Sbjct: 271 VIEGKDFLIQSYKEQKLEL 289
>04_04_0763 -
27854600-27854668,27854766-27855140,27855227-27855901,
27857181-27857219,27859019-27859075,27859629-27859725,
27859978-27860232,27862801-27862937
Length = 567
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 432 LVSAKLPHRANLRFVAALKPFDYSDSPWSFL 340
L+S + HRA R +AAL P D +D+ W ++
Sbjct: 90 LLSGECDHRAR-RPIAALSPEDLADTEWYYV 119
>03_05_0642 -
26346260-26346367,26347902-26348162,26348542-26349849,
26349960-26350178,26350241-26350300,26352159-26352215,
26352945-26353029,26353486-26353843,26353931-26355170
Length = 1231
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/68 (23%), Positives = 30/68 (44%)
Frame = +3
Query: 300 WRSQLVFLDSHNVTRNSKANQNNQKALTQLQTEDSPGEAAWHSPKPEAHTSQESQSPSDM 479
WRS S+N + K + + +A + P A H + + + S+ +++ D
Sbjct: 629 WRSATGVQKSYNKSEAEKEKRRSYEAKRRKLKASMPNSQAVHGQEADNNGSEGAENDDDD 688
Query: 480 NYQNESRL 503
Y NE+ L
Sbjct: 689 LYVNEAFL 696
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,693,725
Number of Sequences: 37544
Number of extensions: 329871
Number of successful extensions: 1022
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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