Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12b17
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    26   0.28 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    26   0.38 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    25   0.66 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    25   0.87 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.5  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   6.1  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +1

Query: 19  RDGNSSRVTRSTPQWTWDA*SNASKTTCTYTI 114
           + GN   +    P WTW    N S  T  Y I
Sbjct: 94  KTGNGGPLLAPYPDWTWAKNENCSGITSAYKI 125


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 402 SPGEAAWHSPKPEAHTSQESQ 464
           +P EA+WHSP+     +Q+ Q
Sbjct: 150 TPTEASWHSPEAHISVAQKLQ 170


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +1

Query: 16  ERDGNSSRVTRSTPQWTWDA*SNASKTTCTYTI 114
           E+ GN  R+ +  P W+W    + S     Y I
Sbjct: 99  EKIGNGGRLLQPYPDWSWANYKDCSGIVSAYKI 131


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = +1

Query: 25  GNSSRVTRSTPQWTWDA*SNASKTTCTYTI 114
           GN   +    P W+W    N S  T  Y I
Sbjct: 99  GNGGPLLEPYPNWSWAKNQNCSGITSVYRI 128


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +3

Query: 186 QTCDTVKLKWKTI 224
           Q CD+VK+K++T+
Sbjct: 324 QNCDSVKIKFETL 336


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = +1

Query: 16  ERDGNSSRVTRSTPQWTWDA*SNASKTTCTYTI 114
           E+ GN   + +  P W+W    + S     Y I
Sbjct: 99  EKIGNGGCLLQPYPDWSWANYKDCSGIVSAYKI 131


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,182
Number of Sequences: 438
Number of extensions: 4020
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)