Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt12b13
(393 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 48 7e-07
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 37 0.001
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 36 0.002
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 35 0.005
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 34 0.007
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 33 0.021
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 32 0.028
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 32 0.028
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 32 0.028
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 32 0.037
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.048
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 30 0.11
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.26
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 29 0.26
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 27 1.0
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 27 1.4
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 3.2
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 25 4.2
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 5.5
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 5.5
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 24 7.3
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 24 7.3
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 24 7.3
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 24 9.7
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 24 9.7
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 47.6 bits (108), Expect = 7e-07
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = +2
Query: 116 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTF 295
+T++FVG +P + ED+ F+ +G + +C +MN GFV ++ A + F
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEF 62
Query: 296 NGGVISVE 319
G I VE
Sbjct: 63 MGSRIVVE 70
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 36.7 bits (81), Expect = 0.001
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Frame = +2
Query: 116 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN-------RCGFVHMQTEEQAAAAIR 274
+ +V+VG+L + +L++ + G V C+I+N C + T E+A AI+
Sbjct: 65 ERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIK 124
Query: 275 ALHNSTFNGGVISV 316
L N F G ++ +
Sbjct: 125 TLSNQKFMGRLVYI 138
Score = 26.6 bits (56), Expect = 1.4
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Frame = +2
Query: 125 VFVGSLPQGSKPEDLRKLFERFGVVTECDI-------MNRCGFVHMQTEEQAAAAIRALH 283
++VG+LP + +L LF G V I G V + E AA++I L+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 284 NSTFNG 301
+ G
Sbjct: 342 GYRYGG 347
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 35.9 bits (79), Expect = 0.002
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Frame = +2
Query: 116 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN---------RCGFVHMQTEEQAAAA 268
+ +++VG L + DL F RFG V+ +I+N R +++ +T+E
Sbjct: 4 EKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQK 63
Query: 269 IRA-LHNSTFNGGVISVE 319
++ L N+TF G + +E
Sbjct: 64 CKSYLSNATFKGSKLRIE 81
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 34.7 bits (76), Expect = 0.005
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 13/81 (16%)
Frame = +2
Query: 116 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR-------------CGFVHMQTEEQ 256
+ ++VG+LP + DL +LFE FG ++ +++R F+ + +
Sbjct: 19 EISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCS 78
Query: 257 AAAAIRALHNSTFNGGVISVE 319
A AI +L+ S+F G + VE
Sbjct: 79 ADNAIASLNGSSFQGNTLKVE 99
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 34.3 bits (75), Expect = 0.007
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 125 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM--NRCGFVHMQTEEQAAAAIRAL 280
VFVG L + E+L+ LF+ FG + I CGFV + A AI L
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQL 358
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 32.7 bits (71), Expect = 0.021
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 125 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM--NRCGFVHMQTEEQAAAAIRALHNSTFN 298
VF+G+LP G +++R+ E FG + + I+ FVH AAAI+A+ N
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFL---NIAAAIKAVQELPLN 264
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 32.3 bits (70), Expect = 0.028
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +2
Query: 119 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFN 298
T V+V LP+ ++LR F FG + + N G + A AI ++N +
Sbjct: 176 TAVYVHQLPENITTQELRSYFLHFGEILYTQVNNNSGRIVFAQRYFAEQAINEMNNFPLH 235
Query: 299 G 301
G
Sbjct: 236 G 236
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 32.3 bits (70), Expect = 0.028
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 122 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 217
K+F+G L + + LR FE+FG V +C +M
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVM 195
Score = 29.5 bits (63), Expect = 0.19
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 122 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 217
K+FVG +P E+ R F +FG V + +M
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLM 279
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 32.3 bits (70), Expect = 0.028
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 125 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--CGFVHMQTEEQAAAAIRAL 280
VF+G+LP +++ + F +FG + I+++ FVH A +R L
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTL 354
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.9 bits (69), Expect = 0.037
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +2
Query: 104 IMVPQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN---RCGFVHMQTEEQAAAAIR 274
I V +F+G + + + LR +FERFG V I+N R GF+ M + A A
Sbjct: 401 IKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSL-ILNHNYRHGFLKMFRRDAAEKAQV 459
Query: 275 ALHNSTF 295
A+ N F
Sbjct: 460 AMENVPF 466
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 31.5 bits (68), Expect = 0.048
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Frame = +2
Query: 95 KSVIMVPQTKVFVGSLPQG-SKPEDLRKLFERFGVVTECDIMNR-----CG--FVHMQTE 250
K++ + ++ + +LP KP+ L F +FG V E I + CG FV M+
Sbjct: 99 KTIRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDR 158
Query: 251 EQAAAAIRALHNSTFNGGVISVE 319
+ A A+ +L+ + +G I+V+
Sbjct: 159 KAAEEAMNSLNGTEIDGRPIAVD 181
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 30.3 bits (65), Expect = 0.11
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 113 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 217
P+ +FV L ++ EDL +F RFG + C ++
Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVI 276
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 29.1 bits (62), Expect = 0.26
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 119 TKVFVGSLPQGS-KPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTF 295
+++F+G L S +L K+F+ +G + + + GFV T E A A+ A +
Sbjct: 363 SRLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFV 422
Query: 296 NGGVISVE 319
G + +E
Sbjct: 423 RGQKLHLE 430
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 29.1 bits (62), Expect = 0.26
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 122 KVFVGSLPQGSKPEDLRKLFERFGVVTECDI 214
+VFVG L +K ++R LFE G V + I
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 27.1 bits (57), Expect = 1.0
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = +1
Query: 226 RVRAYADRGTSGSSNSRASQLDI*RRRHIRGARSHQRTRAAW 351
RV A A S SS ++A + R H R R H W
Sbjct: 292 RVSARASSSASSSSRTQAKSIPSHERTHYRLIRQHPELEHVW 333
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 26.6 bits (56), Expect = 1.4
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Frame = +2
Query: 125 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIRALH 283
VF+ +L + L F FG + C + GFVH + E A AAI ++
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
Query: 284 NSTFN 298
N
Sbjct: 230 GMLLN 234
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 3.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 125 VFVGSLPQGSKPEDLRKLFERFGVV 199
+FVG+LP+ S E L+ F+R G V
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQV 118
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 25.0 bits (52), Expect = 4.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 125 VFVGSLPQGSKPEDLRKLFERFGVV 199
++VG LP G + +R F +FG V
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPV 131
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 24.6 bits (51), Expect = 5.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 113 PQTKVFVGSLPQGSKPEDLRKLF 181
P ++VG+LP + E+L+ LF
Sbjct: 424 PCNTIYVGNLPPSTSEEELKVLF 446
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 283 VKRANCCCRLFLCLHMHEPAP 221
+KR + CRLF LH H AP
Sbjct: 2062 IKRNDEICRLFDSLHEHVMAP 2082
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 24.2 bits (50), Expect = 7.3
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 252 NKRQQQFARFTTRHLTAASYPWSAVASKNAGSVGAVAVDEVP 377
NK + + TT + T+ S ++ + +GSV + +VP
Sbjct: 638 NKSSEFVGQTTTEYTTSGSVGFTTTLATQSGSVPGTVLVDVP 679
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 24.2 bits (50), Expect = 7.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 149 GSKPEDLRKLFERFGVVTE 205
G K ++L + FE+FG+ TE
Sbjct: 858 GKKEQELSRSFEKFGLGTE 876
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 24.2 bits (50), Expect = 7.3
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -1
Query: 219 FIISHSVTTPKR--SNSFLRSSGLEPCGRLPTNTFVCGTM 106
F HS KR S S + E GR+P+ T+ GTM
Sbjct: 96 FSSQHSPDNRKRMSSTSVFKRINSEEEGRIPSLTYSAGTM 135
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 23.8 bits (49), Expect = 9.7
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = +1
Query: 343 AAWGRSRWTRFHARW 387
++W + W+ FH RW
Sbjct: 416 SSWLNAYWSMFHVRW 430
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 23.8 bits (49), Expect = 9.7
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Frame = +2
Query: 119 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCG----FVHMQTEEQAAAAIRALHN 286
T V + +L G+ +D+ FG + C + + G V T A ++ L
Sbjct: 100 TNVVIENLAPGTSSDDVAATLLNFGEILNCQVNDSQGKVRASVRFSTLASAQQVVQKLDG 159
Query: 287 STFNGGVIS 313
T +G +S
Sbjct: 160 VTADGFKLS 168
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,373,344
Number of Sequences: 5004
Number of extensions: 23870
Number of successful extensions: 99
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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