Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt12b13
         (393 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   0.41 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.41 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   0.95 
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   2.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   8.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   8.8  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 24.6 bits (51), Expect = 0.41
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 312 PWSAVASKNAGSVGAVAVDEVPC 380
           PWS ++ + A  V  + VD+  C
Sbjct: 285 PWSYMSGEKANEVATILVDDCGC 307


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 24.6 bits (51), Expect = 0.41
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 312 PWSAVASKNAGSVGAVAVDEVPC 380
           PWS ++ + A  V  + VD+  C
Sbjct: 285 PWSYMSGEKANEVATILVDDCGC 307


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 0.95
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 108 MITDLYHFQETMSINCY 58
           M+TD++H QET   + Y
Sbjct: 416 MLTDVFHVQETDKYDAY 432


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 245 SAYARTRTGSLYHTL*RRRN 186
           S Y++TR  +L HTL R  N
Sbjct: 196 SVYSKTRRRALEHTLDRFHN 215


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 6/18 (33%), Positives = 8/18 (44%)
 Frame = +1

Query: 337 TRAAWGRSRWTRFHARWH 390
           T   W    WT  H +W+
Sbjct: 53  TTNCWVTQIWTDHHLKWN 70


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 236  HMQTEEQAAAAIRALHNSTFNGGVISVE 319
            H Q ++Q    +  +  S+ +G +ISVE
Sbjct: 1103 HQQQQQQQQKILAKVLTSSNSGQLISVE 1130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,513
Number of Sequences: 438
Number of extensions: 1606
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)